Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Post-analysis of immune repertoire sequencing data

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

NetTCR-2.0. Sequence-based prediction of peptide-TCR binding

Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2021)

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

A scanpy extension to analyse single-cell TCR and BCR data.

Compute generation probabilities of CDR3 amino acid and nucleotide sequences