Commits

History for

Commits on Jun 13, 2024

Merge branch 'mskilab-org:master' into master
stanleyrc
authoredJun 13, 2024

Commits on Apr 16, 2024

updates
Stanley Clarke
committedApr 16, 2024

Commits on Apr 12, 2024

matrix coercion to vector when nrow = 2 bug fix
jrafailov
committedApr 12, 2024

Commits on Mar 11, 2024

adds ability for offset for allelic genome graphs. temporary fix. In the future will want to consider overlap only if major and minor have the same cn
Stanley Clarke
committedMar 11, 2024

Commits on Mar 8, 2024

make genome json work with objects without edges and weights
Stanley Clarke
committedMar 8, 2024

Commits on Feb 13, 2024

Coerces col (for the ggraph json function), which is used in gtrack to color nodes, to color which is the name to color nodes in pgv
Stanley Clarke
committedFeb 13, 2024

Commits on Jan 31, 2024

Fixes get(cid.field) error when the genome graph only has loose ends and no other edges
Stanley Clarke
committedJan 31, 2024

Commits on Jan 30, 2024

Speeds up creation of arrow files by not printing every single bin
Stanley Clarke
committedJan 30, 2024

Commits on Jan 24, 2024

Merge pull request #1 from mskilab-org/master
stanleyrc
authoredJan 24, 2024

Commits on Jan 22, 2024

Fixes walks json by adding unique identifiers for each node of a walk
Stanley Clarke
committedJan 22, 2024

Commits on Jan 18, 2024

Merge pull request mskilab-org#93 from DoaneAS/master
shihabdider
authoredJan 18, 2024

Commits on Jan 16, 2024

Fixes Different Json creation when using annotations
Stanley Clarke
committedJan 16, 2024

Commits on Sep 20, 2023

Update test_CPLEX.R
tanubrata
authoredSep 20, 2023
Merge pull request #1 from tanubrata/dev
tanubrata
authoredSep 20, 2023
cheking from own fork before creating a merge
tanubrata
committedSep 20, 2023
Added some fix for testing CPLEX
tanubrata
committedSep 20, 2023

Commits on Sep 19, 2023

Commits on Aug 25, 2023

Merge branch 'mskilab-org:master' into master
tanubrata
authoredAug 25, 2023

Commits on Aug 7, 2023

refactor: Add parse.js.seqlengths to export
shihabdider
committedAug 7, 2023

Commits on Apr 10, 2023

renaming
Max Chao
committedApr 10, 2023
file rename
Max Chao
committedApr 10, 2023
fix gGnome.R from KSK temp fix
Max Chao
committedApr 10, 2023
edits to jsUtils to allow empty gw,ggraph and coverages
Max Chao
committedApr 10, 2023
Merge branch 'master' via updates from Zi Ning of https://github.com/MaxLChao/gGnome
Max Chao
committedApr 10, 2023
Merge branch 'mskilab:master' into master
MaxLChao
authoredApr 10, 2023

Commits on Apr 7, 2023

formatting
Max Chao
committedApr 7, 2023

Commits on Jan 30, 2023

flip strand automatically when using bedpe
zining01
committedJan 30, 2023

Commits on Jan 25, 2023

bug fix to handle empty bedpe input
zining01
committedJan 25, 2023

Commits on Jan 23, 2023

changes to address rbindlist fails
Max Chao
committedJan 23, 2023

Commits on Jan 10, 2023

changes to fully functionalize the gwalk in add graphs.
Max Chao
committedJan 10, 2023

Commits on Jan 9, 2023

Merge branch 'mskilab:master' into master
MaxLChao
authoredJan 9, 2023
faster map of color to numeric for color 2 numeric in coverage calls
Max Chao
committedJan 9, 2023

Commits on Dec 22, 2022

push functionality added.
Max Chao
committedDec 22, 2022

Commits on Dec 21, 2022

edits to database-ize the PGV back end for easier access, addition and subtraction of graphs, tags, and patient ids
Max Chao
committedDec 21, 2022