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The script presents a simple way to visualize features on human chromosome ideograms
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
a generative Large Language Model for generalized linear and nonlinear multivariate latent-variable multilevel/mixed modelling
Streamlit — A faster way to build and share data apps.
Python bindings for Bifrost with a NetworkX compatible API
Long read aligner for cyclic and acyclic pangenome graphs
Tandem repeat genotyping and visualization from PacBio HiFi data
Strain-level haplotyping for metagenomes with short or long-reads.
ultrafast genome querying and taxonomic profiling for metagenomic samples by abundance-corrected minhash.
This list of writing prompts covers a range of topics and tasks, including brainstorming research ideas, improving language and style, conducting literature reviews, and developing research plans.
Webserver and command line tool for annotating engineered plasmids
Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
Tool to seach for similarity between a cell line STR markers and those stored in the Cellosaurus knowledge resource
Variant Site Strain Typer: Identifies the minimum number of variable genomic site that are required to resolve a group of related bacterial strains
An extremely fast Python linter and code formatter, written in Rust.
Transforms PDF, Documents and Images into Enriched Structured Data
🛁 Clean Code concepts adapted for Python
Pathoscope: Species identification and strain attribution with unassembled sequencing data
An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Tool for decomposition centromeric assemblies and long reads into monomers