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Sphinx documentation source for a computational genomics tutorial.

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Computational Genomics Tutorial pages

Build Status PyUp ReadTheDocs

A computational genomics tutorial with continuous integration, using Travis-CI, and deployment, using Netlify, and sphinx.

The production version of the deployed site:

Details

  • Netlify runs Ubuntu Xenial 16.04 build, with a python3.5 installed.
  • Thus, need to use py3.5

Local development of tutorial

  1. Set up a python virtual environment named venv => pip install virtualenv; virtualenv --python=python3.5 venv.
  2. Activate the venv environment => source venv/bin/activate
  3. Install the dependencies inside of it by running pip install -r requirements_dev.txt.
  4. Run make htmlwatch.
  5. Edit your rst-files.
  6. Commit changes
  7. Bump version using, e.g. bump2version patch
  8. Push changes to remote

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Sphinx documentation source for a computational genomics tutorial.

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