Proteomatic provides a free and accessible proteomics data processing pipeline. Bits of functionality can be chained together, and functionality is provided through self-descriptive scripts.
More information can be found at https://proteomatic.org/.
Proteomatic requires Qt, libyaml-cpp, QuaZIP and Ruby. It also requires libmd5-rfc but a copy of this library’s source code is already included in the source code of Proteomatic.
$ git submodule update --init $ qmake "PROTEOMATIC_PORTABLE=1" $ make release
This gives you a version which will run from within the source directory, downloads all scripts and required software packages into its own directory and does not change anything else in the file tree.