Update project from template

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
-_commit: 612c807
+_commit: be9e466
 _src_path: gh:blakeNaccarato/copier-python
 actions_runner: ubuntu-latest
 active: true

.pre-commit-config.yaml

@@ -78,12 +78,17 @@ repos:
  hooks:
  - id: "end-of-file-fixer"
  - id: "trailing-whitespace"
+ - repo: "https://github.com/DavidAnson/markdownlint-cli2"
+ rev: "v0.11.0"
+ hooks:
+ - id: "markdownlint-cli2-fix"
  - repo: "https://github.com/srstevenson/nb-clean"
  rev: "3.2.0"
  hooks:
  - id: "nb-clean"
  args:
  - "--remove-empty-cells"
+ - "--preserve-notebook-metadata"
  - "--preserve-cell-metadata"
  - "tags"
  - "--"
@@ -93,10 +98,6 @@ repos:
  |docs/.*
  |tests/.*
  )$
- - repo: "https://github.com/DavidAnson/markdownlint-cli2"
- rev: "v0.11.0"
- hooks:
- - id: "markdownlint-cli2-fix"
  - repo: "https://github.com/charliermarsh/ruff-pre-commit"
  rev: "v0.1.11"
  hooks:

.vscode/settings.json

@@ -40,8 +40,8 @@
  "editor.formatOnSaveMode": "file",
  "editor.formatOnType": false,
  "editor.codeActionsOnSave": {
- "source.fixAll.ruff": "always",
- "source.organizeImports.ruff": "always"
+ "source.fixAll": "always",
+ "source.organizeImports": "always"
  },
  //* Files
  //? Related autoformatting of whitespace conventions
@@ -56,10 +56,15 @@
  //* Notebook
  //? https://github.com/microsoft/vscode/issues/195223#issuecomment-1800137313
  "notebook.insertFinalNewline": false,
- //? Avoid code actions on notebook save for now, Ruff misbehaves in certain cases
+ //? Code actions on notebook save partially work now
+ //? Need to raise an issue about `notebook.source.organizeImports` not behaving
  //? https://github.com/astral-sh/ruff-lsp/issues/320
  "notebook.formatOnCellExecution": true,
  "notebook.formatOnSave.enabled": true,
+ "notebook.codeActionsOnSave": {
+ "notebook.source.fixAll": "explicit",
+ "source.organizeImports": "explicit"
+ },
 
  //! GitHub Actions
  "github-actions.workflows.pinned.workflows": [".github/workflows/main.yml"],

pyproject.toml

@@ -70,6 +70,7 @@ xfail_strict = true
 
 [tool.pyright]
 include = ["src", "tests", "docs"]
+stubPath = "submodules/typings"
 useLibraryCodeForTypes = true
 typeCheckingMode = "strict"
 # Default "true" in strict
@@ -161,14 +162,10 @@ preview = false
 unsafe-fixes = false
 cache-dir = ".cache/.ruff_cache"
 fixable = ["ALL"]
-extend-exclude = ["submodules"]
+extend-exclude = ["submodules/**"]
 extend-include = ["*.ipynb"]
 select = ["ALL"]
-src = ["src", "tests"]
 target-version = "py311"
-extend-unfixable = [
- "F841", # Unused variables
-]
 extend-ignore = [
  "ANN", # Don't require type annotations
  "ARG005", # Allow unused lambda argument. For consistency across df pipelines.