2.7.1 (2024-08-22)

Bug Fixes

• Move signed_pi_value_* columns into detail mode that dont include the primary variable (#110) (a159b4c)
• Move signed_pi_value_* columns to the end and move non primary variable columns to detail mode (#106) (8b2e3fe)
• Remove IHW outputs from report (#107) (aa891fa)
• Update datavzrd wrapper version (#109) (1fe8c2c)

2.7.0 (2024-08-15)

Features

• Improve datavzrd tables (#93) (93512b8)

Bug Fixes

• Fix missing output in spia.R when no significant genes are found (#103) (bc0d017)
• Handle missing bam columns in units.tsv (#105) (bae88d0)
• Remove non-existent outputs in spia rule (#102) (0fbb930)
• update to latest datavzrd (417ec3b)

Performance Improvements

• datavzrd wrapper v3.12.1, offer-excel configurable, free disk space for CI, dynamic sleuth_init mem_mb, pure download rules as localrules (#92) (70850fb)
• Update datavzrd wrapper (#98) (e5eb0e0)
• Update samtools fast separate wrapper (#100) (65d8f41)

2.6.0 (2024-06-05)

Features

• Allow bam input files (#94) (4a1f983)

Performance improvements

• chore: update datavzrd to latest version v3.5.2

2.5.4 (2024-01-31)

Performance Improvements

• improve spia script and report (#83) (4b3cc16)

2.5.3 (2024-01-30)

Bug Fixes

• canonical transcript mapped read extraction (#77) (52b56b0)

2.5.2 (2023-09-14)

Bug Fixes

• simpler three prime QuantSeq cutadapt setup (#78) (ecc9ab7)
• update samtools.yaml to latest 1.17 and update github actions (#75) (0fe7948)

Performance Improvements

• bump datavzrd wrapper to 2.6.0 and general bug fixes (#80) (657c465)

2.5.1 (2023-06-14)

Bug Fixes

• Updated the get-transcript-info.R file and its dependencies (#73) (e44d424)

2.5.0 (2023-05-13)

Features

• Support for 3-prime RNA sequencing (#62) (c06c573)

Bug Fixes

• fix report labels (#72) (76c7fd9)

2.4.3 (2023-02-06)

Bug Fixes

• Feature/update cutadapt wrapper (#67) (29d7967)