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FragPipe-ready fasta headers and redundancy reduction
Compatibility
#221
opened Aug 24, 2021 by
MiguelCos
Warn user that "MatePair" must be specified before running sample
GUI
Improve Feature
#131
opened Sep 20, 2018 by
acesnik
Should we check for different codon tables in SnpEff when choosing a nonhuman species?
Improve Feature
#164
opened Nov 16, 2019 by
acesnik
Generating proteogenomic database for Pseudomonas with VCF called from WGS (or exome seq) data
Question
#185
opened Aug 23, 2020 by
animesh
Can we figure out the unknown start/stop codons for putative transcripts from proteomics data?
Question
#5
opened Oct 24, 2017 by
acesnik
Option to generate separate databases for each input
New Feature
#216
opened Jul 30, 2021 by
acesnik
Using Arabidopsis sequences for tests instead of yeast
Maintenance
#224
opened Feb 19, 2022 by
acesnik
Update uniprot URLs to rest.uniprot from legacy.uniprot
Maintenance
#226
opened Sep 6, 2022 by
acesnik
Enable running Spritz with singularity
Compatibility
New Feature
#239
opened Sep 13, 2023 by
acesnik
Implement variant finding for species without reference VCF
New Feature
#186
opened Aug 25, 2020 by
acesnik
ProTip!
What’s not been updated in a month: updated:<2024-08-10.