a tool for simulating nanopore raw signal data

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

A general-purpose tool for dynamic report generation in R

Software for prediction of plasmid sequences in metagenomic assemblies

A curated list of awesome nanopore analysis tools.

🛡️ Windows Hello™ style facial authentication for Linux

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Entry point for issues and wiki. Also contains some scripts and sources.

Generalized creator of S3 methods.

centroids and distances

Utilities for my daily work in R.

Official repo for the #tidytuesday project

Flip-flop basecaller for Oxford Nanopore reads

Nanopore basecalling and consensus decoding

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Data and analysis for NA12878 genome on nanopore

R and Shiny approach to draw bar plots with indicated data points

Specifications of SAM/BAM and related high-throughput sequencing file formats

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Quality control for MinION sequencing data

A comparison of different Oxford Nanopore basecallers

Implementation of research papers on Deep Learning+ NLP+ CV in Python using Keras, Tensorflow and Scikit Learn.

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Scripts and data used during the analysis of LINE-1 RACE seq tail-seq output, for the publication "Uridilation by TUT4/7 restricts retrotransposition of human LINE-1"s (Warkocki et al 2018, Cell, a…