sirselim
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small R script to provide quick annotation and gene lists for series of IlmnID's (450k probes)
Copy number caller for long read data including SNV utilization
A Python script to generate markdown tables for Magic: The Gathering cards using the Scryfall API.
MTG Card Markdown Toolkit - a VSCode extension to grab card image and information for markdown documents.
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
This script generates "baited" sequences from across a provided reference to search for them in fastq file(s)
MethPhaser: methylation-based haplotype phasing of human genomes
Estimating repeat spectra and genome length from low-coverage genome skims
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
Tool for globally phasing diploid assembly graphs with orthogonal data
Single cell Nanopore sequencing data for Genotype and Phenotype
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
ClairS - a deep-learning method for long-read somatic small variant calling
Run applications through VPN tunnels with temporary network namespaces
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
SV detection tool for nanopore sequence reads
The buttery eel - a slow5 guppy/dorado basecaller wrapper
A simple toolkit for manipulating nanopore signal data
Signal based nanopore RNA demultiplexing with convolutional neural networks