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  • shared_seurat_scripts Public

    Shared functions used in many scripts

    R 1 Updated Sep 20, 2023

  • HTAN_BRCA_publication Public

    Forked from ding-lab/HTAN_BRCA_publication

    adding st part

    R Updated Jul 21, 2023

  • cytospace Public

    Forked from digitalcytometry/cytospace

    CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data

    Python 1 Other Updated Mar 22, 2023

  • HTAN Public

    Processing script for spatial data in HTAN

    Shell Updated Mar 16, 2023

  • spacexr_util Public

    Forked from dmcable/spacexr

    Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

    HTML GNU General Public License v3.0 Updated Mar 15, 2023

  • celltrekplot Public

    plotting functions for cell trek

    R 1 Updated Dec 21, 2022

  • Spaceranger_pipeline Public

    DingLab spaceranger pipeline

    Shell Updated Dec 9, 2022

  • 3Dreconstruction_prep Public

    Instruction and script to generate files needed files for 3D reconstruction tool by Tao and Aiden

    R Updated Nov 8, 2022

  • pik3ca_proteomics Public

    pik3ca proteomics phospho processing and analysis script

    R Updated Oct 6, 2022

  • simoncmo Public

    Config files for my GitHub profile.

    config github-config
    Updated Sep 7, 2022

  • EnhancedSeurat Public

    This is repo with some enhanced Seurat default functions I found it useful for plotting

    R Updated Aug 25, 2022

  • visium_neighboorhood Public

    Explore neighborhood using Visium ST

    R Updated Apr 30, 2022

  • NMK_scripts Public

    St NMK scripts

    R MIT License Updated Nov 4, 2021

  • InferCNV_Rscript Public

    Place to put the script I used to process scRNA-seq CCRCC sample data before running inferCNV

    R Updated Aug 21, 2019