Stars
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
Simple tool for capturing alignment regions with sufficient quality for genotyping.
A minimalist tree plotting library using toyplot graphs
A library of standard population genetic models
A better, faster way to count guides in CRISPR screens.
A small utility for formatting things the way Tim prefers.
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.
Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
Shiny apps for BIOL 470: Evolutionary Biology at UH Mānoa
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platf…
RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
A Python package for exploring and analysing genetic variation data
feature-based deep learning for the identification of selective sweeps
Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more
Demographic analysis of Brassica oleracea
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
Materials for the RC New User Seminar
A light weight package for the (d/r)dirichlet functions for the Dirichlet distribution in R
discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples