Changes

• SeqKit v0.16.0
  • new command seqkit head-genome:
    • print sequences of the first genome with common prefixes in name
  • seqkit grep/locate/amplicon -m
    • much faster (300-400x) searching with mismatch allowed by optimizing FM-indexing and parallelization.
    • new flag -I/--immediate-output.
  • seqkit grep/locate:
    • fix bug of -m when querying contains letters not in alphabet, usually for protein sequences. #178, #179
    • onply search on positive strand when searching unlimited or protein sequences.
  • seqkit locate:
    • removing debug info for -r introduced in a0f6b6e. #180
  • seqkit amplicon:
    • fix bug of -m, when mismatch is allowed.
  • seqkit fx2tab:
    • new flag -C/--base-count for counting bases. #183
  • seqkit tab2fx:
    • fix a rare bug. #197
  • seqkit subseq:
    • fix bug for BED with empty columns. #195
  • seqkit genautocomplete:
    • support bash|zsh|fish|powershell.