The LucaOne’s code, including model code and pre-training code.

We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a protein sequence has phosphate-solubilizing functionality and i…

LangGPT: Empowering everyone to become a prompt expert!🚀 Structured Prompt，Language of GPT, 结构化提示词，结构化Prompt

A set of scripts used for tracking structural variations around a gene of interest

Cross-platform Path of Building driver

Read coverage calculator for metagenomics

Compute a pairwise SNP distance matrix from one or two alignment(s)

Simulating paired-end short sequencing reads from circular and linear genomes

Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results

geNomad: Identification of mobile genetic elements

Translate Words or Sentences via Online Translators

Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

Quickly search, compare, and analyze genomic and metagenomic data sets.

Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.

AI Native Data App Development framework with AWEL(Agentic Workflow Expression Language) and Agents

Chinese-Vicuna: A Chinese Instruction-following LLaMA-based Model —— 一个中文低资源的llama+lora方案，结构参考alpaca

a tool to filter sites in a FASTA-format whole-genome pseudo-alignment

An updated pipeline for pangenome investigation

Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads

🌳 Create a tree using Mash distances

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

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