Support for Minimum Inhibitory Concentration (MIC) method #28
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Depending on the method assigned to the AST panel, the system will create analyses for diffusion disk method or analyses for Minimum Inhibitory Concentration Method.
ramonski
approved these changes
Sep 29, 2023
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Description of the issue/feature this PR addresses
This Pull Request adds support for the Minimum Inhibitory Concentration (MIC) method.
An additional field for method selection has been added in AST Panel content type, allowing the user to choose amongst Diffusion Disk and MIC methods. When the former is selected, the options that are specific for diffusion disk are displayed: disk content (potency) and zone diameter (DIZ). Likewise, when MIC method is selected, only the option MIC value is displayed.
Two additional columns "S<=", "R>" for MIC-specific testing have been added in Panels Breakpoint as well, following the same layout as EUCAST (see https://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Breakpoint_tables/v_13.0_Breakpoint_Tables.pdf):
Current behavior before PR
Only Diffusion disk method is supported
Desired behavior after PR is merged
Both diffusion disk and MIC methods are supported
AST Panel edit view with Diffusion disk method selected:
AST Panel edit view with MIC method selected:
Sensitivity results entry for a panel with MIC method enabled:
New service
senaite_ast_micfor MIC value introduction:Breakpoints table edit view, with MIC breakpoints:
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I confirm I have tested this PR thoroughly and coded it according to PEP8
and Plone's Python styleguide standards.