sekalylab / vb013 Public

Notifications You must be signed in to change notification settings
Fork 0
Star 1

Repo for the R code used for the RNA-Seq analysis in Bissa M. et al 2023 Nat Commun

1 star 0 forks Branches Tags Activity

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
code		code
figure		figure
input		input
output		output
.gitignore		.gitignore
LICENSE.md		LICENSE.md
README.md		README.md

Repository files navigation

VB013: source code

Fig. 2a

Fig. 2a: R code [MD]

RNA-Seq analysis

code:

preprocessing: [MD]

input:

non-normalized (raw) gene counts: [CSV]
sample annotation: [XLSX]
alignment QC metrics: [TSV]
Rhesus Mmul_8 genome annoation: [GTF]

output:

raw SeqExpressionSet: [RDA]
normalized SeqExpressionSet: [RDA]
pre-vaccination substracted SeqExpressionSet: [RDA]
DGEGLM list: [RDA], [RDA]