A stitching platform for InXight

An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPed also computes a variety of relatedness coefficients and of…

My first RAG application

A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.

R client for the OmniPath web service

Alternative to pkgdown to document packages

CodeBuddy: A programming assignment management system for short-form exercises

SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases

Graphinate. Data to Graphs.

Example genomics data for tool developers

EmbedPVP: Embedding-based Phenotype Variant Predictor

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

Positron, a next-generation data science IDE

A jekyll template derived from Minimal Mistakes and inspired by academicpages. To see an example of what a webpage might look like with this repo, see matthewkirby.github.io.

A Jekyll theme for academia

Rain is a simple and clean Jekyll theme with focus on content.

Mundana is a free Jekyll theme, Medium styled.

A simple and minimal command-line snippet manager

Create beautiful diagrams just by typing notation in plain text.

⭐ star layer for ggplot2

Measuring agreement of lists

LLM-based gene function enrichment tool

An ontology modeling classes and relationships describing deep learning networks, their component layers and activation functions, machine learning methods, as well as AI/ML potential biases.

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

A simple Snakemake profile for Slurm without --cluster-config

Open-Source Software for Omic Data Analysis and Visualization