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Lists (15)
Starred repositories
This project is a Chrome extension named "explain2me" that allows users to scrape a web page for text and use a Language Model (LLM) to summarize the page in 250 words.
🔥 Turn entire websites into LLM-ready markdown or structured data. Scrape, crawl and extract with a single API.
An R Pandoc Writer: Convert arbitrary R objects into markdown
An open-source RAG-based tool for chatting with your documents.
Python API for stats.nba.com with a focus on NBA and WNBA applications
FHIR Resources https://www.hl7.org/fhir/resourcelist.html
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
A command-line interface for LLMs written in Bash.
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
Implementation of Flask-login on top of Dash.
A Python package for clustering of single nucleotide variants from high-through seqencing data.
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…
Package for fetching metadata and downloading data from SRA/ENA/GEO
A unifying framework for biomedical research knowledge graphs
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
Library for indexing VCF files for random access searches by rsID
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
provides common tools and lookup tables used primarily by the hgvs and uta packages
A fast, scalable, and accurate local ancestry method.
Cloud-native genomic dataframes and batch computing
PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
KGX is a Python library for exchanging Knowledge Graphs
Conda recipes for the bioconda channel.
Open Targets python framework for post-GWAS analysis