5 Pull requests merged by 3 people

• Backport PR #3328 on branch 1.10.x (Align get.obs_df’s docs with its code)

  #3334 merged Oct 31, 2024

• Align get.obs_df’s docs with its code

  #3328 merged Oct 31, 2024

• Support layer in sc.pl.highest_expr_genes

  #3324 merged Oct 31, 2024

• Backport PR #3285 on branch 1.10.x (Update test_rank_genes_groups.py reference)

  #3327 merged Oct 28, 2024

• Update test_rank_genes_groups.py reference

  #3285 merged Oct 28, 2024

5 Pull requests opened by 4 people

• [pre-commit.ci] pre-commit autoupdate

  #3329 opened Oct 28, 2024

• ~ 35.63% faster filtering

  #3330 opened Oct 29, 2024

• (fix): sort pca test args

  #3333 opened Oct 31, 2024

• move all `njit` calls into a decorator

  #3335 opened Oct 31, 2024

• Fix-pca-tests

  #3336 opened Oct 31, 2024

3 Issues closed by 3 people

• Improve input descriptions for scanpy.get.obs_df

  #3310 closed Oct 31, 2024

• sc.pl.highest_expr_genes() with layer errors

  #3318 closed Oct 31, 2024

• Cannot save to defined path

  #3276 closed Oct 30, 2024

2 Issues opened by 2 people

• Documentation typo for scanpy.pp.filter_cells

  #3332 opened Oct 30, 2024

• ValueError: Output dtype not compatible with inputs.

  #3331 opened Oct 30, 2024

6 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• (feat): `calculate_qc_metrics` with `dask`

  #3307 commented on Oct 30, 2024 • 2 new comments

• Speedup (~20x) of scanpy.pp.regress_out function using Linear Least Square method.

  #3284 commented on Oct 31, 2024 • 1 new comment

• Feature Request: Option to Plot Highest Absolute Values on Top in sc.pl.umap

  #3326 commented on Oct 28, 2024 • 0 new comments

• Rank_genes_groups -> does not return Axes

  #3205 commented on Oct 30, 2024 • 0 new comments

• Expand dask support

  #2578 commented on Oct 31, 2024 • 0 new comments

• scanpy.pl.stacked_violin - remove "marker label" whitespace if var_names is a list of genes

  #3320 commented on Nov 1, 2024 • 0 new comments