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Issues list

[DOC] Add sphinx.ext.linkcode extension documentation Improvements or additions to documentation enhancement New feature or request
#6 by sbslee was closed Apr 30, 2021 updated Jun 19, 2021
[DOC] Read the Docs automodule not working properly bug Something isn't working documentation Improvements or additions to documentation
#2 by sbslee was closed Apr 21, 2021 updated Jun 19, 2021
2
[DOC] Add sphinx-issues extension documentation Improvements or additions to documentation enhancement New feature or request
#3 by sbslee was closed Apr 21, 2021 updated Jun 19, 2021
[BAM] Add function to slice BAM enhancement New feature or request
#11 by harish0201 was closed May 27, 2021 updated Jul 2, 2021
1
3
[VCF/BED] Add function to convert VCF to BED enhancement New feature or request
#14 by sbslee was closed Jun 3, 2021 updated Jul 2, 2021
1
[VCF] Add function to remove samples with no genotype calls enhancement New feature or request
#16 by sbslee was closed Jun 8, 2021 updated Jul 2, 2021
1
1
[VCF/VEP] Add function to filter by BIOTYPE enhancement New feature or request
#17 by sbslee was closed Jun 9, 2021 updated Jul 2, 2021
1
1
[VCF/VEP] Add function to parse VCF annotated by Ensembl VEP enhancement New feature or request
#19 by sbslee was closed Jun 11, 2021 updated Jul 2, 2021
1
2
[MAF/VCF] Add function to convert MAF to VCF enhancement New feature or request
#21 by sbslee was closed Jun 14, 2021 updated Jul 2, 2021
1
1
[VCF] Add function to filter by genotype key enhancement New feature or request
#23 by sbslee was closed Jun 17, 2021 updated Jul 2, 2021
1
1
[VCF] Add function to remove duplicate records enhancement New feature or request
#24 by sbslee was closed Jun 19, 2021 updated Jul 2, 2021
1
1
[MAF/VCF] Add function to convert unannotated VCF to MAF enhancement New feature or request
#28 by sbslee was closed Jul 2, 2021 updated Jul 2, 2021
1
1
[MAF/VCF] Add function to create rainfall plots enhancement New feature or request
#30 by sbslee was closed Jul 4, 2021 updated Jul 4, 2021
1
1
[VCF] Add function to convert missing genotypes (./.) to REF homozygous (0/0) enhancement New feature or request
#32 by sbslee was closed Jul 19, 2021 updated Jul 27, 2021
1
[BAM] Add function to plot uniformity in read depth enhancement New feature or request
#34 by sbslee was closed Jul 31, 2021 updated Jul 31, 2021
1
[VCF] Error related to pyvcf.VcfFrame.plot_hist bug Something isn't working
#39 by ghost was closed Aug 16, 2021 updated Aug 16, 2021
1
11
[VCF] Add function to create a scatter plot of allele frequency for two datasets enhancement New feature or request
#48 by sbslee was closed Nov 20, 2021 updated Nov 20, 2021
1
[VCF] How to remove all rows with the same variant in VCF file using pyvcf
#46 by emoranska was closed Jan 5, 2022 updated Feb 9, 2022
10
[General] Error during installation fuc via conda
#52 by emoranska was closed Feb 9, 2022 updated Feb 9, 2022
2
[VCF] Add function to compute AC/AN/AF in the INFO column enhancement New feature or request
#53 by sbslee was closed Feb 16, 2022 updated Feb 16, 2022
1
1
[VCF] Add function to remove samples with high missingness enhancement New feature or request
#54 by sbslee was closed Feb 17, 2022 updated Feb 17, 2022
1
[General] Error while importing pyvcf
#55 by evabalini was closed Mar 17, 2022 updated Mar 17, 2022
2
[VCF] Update pyvcf.VcfFrame.filter_sampnum to be more robust
#57 by sbslee was closed Mar 18, 2022 updated Mar 18, 2022
1
[MAF] maf-oncoplt Index Error
#58 by dmontielg was closed Mar 30, 2022 updated Mar 30, 2022
3
[MAF/VCF] pymaf.MafFrame.from_vcf assumes CSQ is the first field in the INFO record enhancement New feature or request
#61 by lbeltrame was closed May 24, 2022 updated May 24, 2022
1
3
ProTip! What’s not been updated in a month: updated:<2024-06-10.