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0.34.0 dev #64

Merged
merged 7 commits into from
Jun 7, 2022
Merged

0.34.0 dev #64

merged 7 commits into from
Jun 7, 2022

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sbslee
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@sbslee sbslee commented Jun 7, 2022

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sbslee added 7 commits May 3, 2022 15:16
@sbslee
Bump up version number
585d325
@sbslee
Update ngs-quant:
37cbe02 
* Add new optional argument ``--stranded`` to :command:`ngs-quant` 
command.
@sbslee
Add pycov.CovFrame.merge and pycov.merge
d0f8809
@sbslee
Update pymaf.MafFrame.from_vcf (#61):
0c334dc 
* :issue:`61`: Update :meth:`pymaf.MafFrame.from_vcf` method to 
automatically detect `CSQ` field in `INFO` column (thanks `@lbeltrame 
<https://github.com/lbeltrame>`__).
@sbslee
Update docs
28dd16b
@sbslee
Update pyvcf.VcfFrame.sort (#63)
80e5d10 
* :issue:`63`: Update :meth:`pyvcf.VcfFrame.sort` method to handle 
contigs that are not pre-defined.
@sbslee
Update docs
25e163a
@sbslee sbslee merged commit de8ce31 into main Jun 7, 2022
@sbslee sbslee deleted the 0.34.0-dev branch June 7, 2022 23:35
This was linked to issues Jun 7, 2022
[VCF] Question on usage #63
Closed
[MAF/VCF] pymaf.MafFrame.from_vcf assumes CSQ is the first field in the INFO record #61
Closed
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[VCF] Question on usage [MAF/VCF] pymaf.MafFrame.from_vcf assumes CSQ is the first field in the INFO record
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@sbslee