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@sb-ncbr

Structural bioinformatics research group at National Centre for Biomolecular Research

Welcome to the website of the Structural bioinformatics research group. Our research group is affiliated with the National Centre for Biomolecular Research at the Faculty of Science, Masaryk University.

In our research, we focus on analysing protein structures, protein fragments, and whole protein families. Specifically, we visualise, validate, and annotate protein structures, detect protein channels and fragments, and calculate the properties of proteins. In parallel, we also develop software tools for performing these analyses. Our software is integrated into key structural bioinformatics databases such as Protein Data Bank and CATH.

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  1. AlphaCharges AlphaCharges Public

    𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFoldDB

    Python 7 2

  2. ChargeFW2 ChargeFW2 Public

    The core part of Atomic Charge Calculator II.

    C++ 23 10

  3. overprot overprot Public

    OverProt creates an overview of secondary structure elements in protein families.

    Jupyter Notebook 2

  4. SecStrAnnotator2 SecStrAnnotator2 Public

    SecStrAnnotator is a software tool for annotation (naming) of secondary structure elements.

    Jupyter Notebook 3

  5. channelsdb channelsdb Public

    ChannelsDB 2 - a comprehensive and regularly updated resource of channels, pores and tunnels

    JavaScript 1

Repositories

Showing 10 of 41 repositories
  • metadata-extractors Public

    Metadata exctractors for various types of data

    sb-ncbr/metadata-extractors’s past year of commit activity
    Python 0 0 0 0 Updated Jul 24, 2024
  • ceitec-schemas Public

    Metadata schemas for various life-science data sources

    sb-ncbr/ceitec-schemas’s past year of commit activity
    TypeScript 0 0 0 0 Updated Jul 24, 2024
  • channelsdb Public

    ChannelsDB 2 - a comprehensive and regularly updated resource of channels, pores and tunnels

    sb-ncbr/channelsdb’s past year of commit activity
    JavaScript 0 MIT 1 0 0 Updated Jul 18, 2024
  • RBP-Tar Public

    RBP-Tar is a web server for the retrieval of experimentally derived binding sites for hundreds of RNA Binding Proteins on the human genome.

    sb-ncbr/RBP-Tar’s past year of commit activity
    HTML 1 MIT 1 0 1 Updated Jul 10, 2024
  • sb-ncbr/rings-conformation-validation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 3, 2024
  • FFFold Public

    FFFold: A tool for the quick optimisation of protein structures from AlphaFold DB

    sb-ncbr/FFFold’s past year of commit activity
    JavaScript 4 MIT 1 0 0 Updated Jun 25, 2024
  • AtomicChargeCalculator2 Public

    Atomic Charge Calculator II (ACC II) is an application for fast calculation of partial atomic charges.

    sb-ncbr/AtomicChargeCalculator2’s past year of commit activity
    TeX 11 MIT 5 0 1 Updated Jun 11, 2024
  • MOLE Public

    A universal toolkit for rapid location and characterization of channels and pores in biomacromolecules

    sb-ncbr/MOLE’s past year of commit activity
    C# 0 MIT 0 0 0 Updated Jun 8, 2024
  • webchemistry Public

    Webchemistry is a set of tools for analysis of 3D structural data from the Protein Data Bank implemented in C#.

    sb-ncbr/webchemistry’s past year of commit activity
    C# 0 MIT 0 0 0 Updated Jun 8, 2024
  • pdb-data-cruncher Public

    PDB data cruncher collects data form PDB and transforms them for ValTrendsDB.

    sb-ncbr/pdb-data-cruncher’s past year of commit activity
    Python 1 0 2 0 Updated Jun 4, 2024

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