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  1. PopPUNK-mod PopPUNK-mod Public

    Simulates core and accessory genome divergence and calculates Hamming and Jaccard distances.

    Python 3

  2. ggCaller ggCaller Public

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    Bifrost graph gene caller.

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  3. unitig-caller unitig-caller Public

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    Methods to determine sequence element (unitig) presence/absence

    Python

  4. bioconda-recipes bioconda-recipes Public

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    Conda recipes for the bioconda channel.

    Shell

  5. graph_benchmarking graph_benchmarking Public

    Python

  6. unitig_coverage unitig_coverage Public

    Contains code to enable analysis of unitig coverage in a DBG.

    C++