Cython bindings and Python interface to HMMER3.

Bioinformatics program inStrain

A nextflow pipeline to perform genome resolved metagenomics

A PyTorch Basecaller for Oxford Nanopore Reads

Gene cluster comparison figure generator

Real time stock and option data.

hybrid assembly pipeline for bacterial genomes

plotting in the terminal

Styled Terminal Markdown Viewer

Python assignments for the machine learning class by andrew ng on coursera with complete submission for grading capability and re-written instructions.

⚡ ♒ Rapid prokaryotic genome annotation

SuperDCA for genome-wide epistasis analysis

An rsync based backup script which only transfers modified files. Smooth integration into OSX Notification Center.

treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes

This repository contains all the data and code used for the paper

Scripts to download genomes from the NCBI FTP servers

Scripts and instructions for submitting annotated microbial genomes to Genbank