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rm Science.md and updated Readme with new pages for Biology.md, Physi…
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23 changes: 23 additions & 0 deletions Astronomy.md
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* [AstroLibs](#astrolibs)
* [Astronomical Imaging](#astronomicalimaging)


* [JuliaAstro group on Github](https://JuliaAstro.github.io)

# AstroLibs
* Astrodynamics.jl :: [An astrodynamics library](https://github.com/helgee/Astrodynamics.jl) in Julia.
* Cosmology.jl :: [Cosmology library](https://github.com/JuliaAstro/Cosmology.jl) for Julia.
* DustExtinction.jl :: [Models for the interstellar extinction due to dust](https://github.com/JuliaAstro/DustExtinction.jl).
* ERFA.jl :: [Julia wrapper for liberfa](https://github.com/JuliaAstro/ERFA.jl)
* JPLEphemeris.jl :: [The JPL Development Ephemerides](https://github.com/helgee/JPLEphemeris.jl) are the results of simulations of the Solar System used for spacecraft navigation and astronomical purposes.
* julia-astro :: [astronomy-related Julia code: skycoords.jl, dustmap.jl](https://github.com/kbarbary/julia-astro)
* Photometry.jl :: [Astronomical photometry library for Julia](https://github.com/kbarbary/Photometry.jl)
* SkyCoords.jl :: [Astronomical coordinate systems](https://github.com/kbarbary/SkyCoords.jl) in Julia.
* WCS.jl :: [Julia wrapper for wcstools library](https://github.com/kbarbary/WCS.jl)
* WCS.jl :: [wcslib wrapper for Julia](https://github.com/nolta/WCS.jl)
* WCSLIB.jl :: [wcslib wrapper for Julia](https://github.com/nolta/WCSLIB.jl)


# Astronomical Imaging
* FITSIO.jl :: [Flexible Image Transport System (FITS) support](https://github.com/JuliaAstro/FITSIO.jl) for Julia.

31 changes: 31 additions & 0 deletions Biology.md
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* [Biotechnology](#biotechnology)
* [Neuroscience](#neuroscience)


* BioJulia on github :: [https://github.com/BioJulia/](https://github.com/BioJulia). The GoogleGroups mailing list/forums:: https://groups.google.com/forum/?fromgroups#!forum/biojulia-dev
* JuliaBio on github :: [https://github.com/JuliaBio](https://github.com/JuliaBio). The GoogleGroups mailing list/forums:: https://groups.google.com/forum/#!forum/julia-bio

### Biotechnology
**Bioinformatics, genomics, agriculture, food science, medicine, genetic engineering, etc...**
* Bio.jl :: [Bioinformatics and Computational Biology Infrastructure](https://github.com/BioJulia/Bio.jl) for Julia.
* BioSeq.jl :: Julia's package for working on [Bioinformatics with DNA, RNA and Protein Sequences](https://github.com/diegozea/BioSeq.jl).
* Circuitscape.jl :: The [Julia implementation](https://github.com/tanmaykm/Circuitscape.jl) of the [Circuitscape lib in Python](http:https://www.circuitscape.org/) that uses electronic circuit theory to solve problems in landscape ecology.
* FastaIO.jl :: [Utilities to read/write FASTA format files](https://github.com/carlobaldassi/FastaIO.jl) in Julia.
* GaussDCA.jl :: [Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families](https://github.com/carlobaldassi/GaussDCA.jl).
* GeneticAlgorithms.jl :: is a [lightweight framework that simplifies the process of creating genetic algorithms](https://github.com/forio/GeneticAlgorithms.jl) and running them in parallel.
* OBC.jl :: [Optimal Bayesian classification for RNA-Seq data](https://github.com/binarybana/OBC.jl)
* pikaiaGAs.jl :: [Genetic algorithms](https://github.com/tmeits/pikaiaGAs.jl)
* Phylogenetics.jl :: The Julia package for [analysis of evolution and phylogeny](https://github.com/Ward9250/Phylogenetics.jl)
* Pagel.jl :: can [detect correlated evolution on phylogenies](https://github.com/porterjamesj/Pagel.jl)
* SeqUtils.jl :: [Seqencing analysis Utilities for Julia](https://github.com/nlhepler/SeqUtils.jl)
* SpikeSorter.jl :: [Spike sorting tool for experimental neuroscientists](https://github.com/grero/SpikeSorter.jl)
* smoothlife-jl :: [is an implementation of the SmoothLife algorithm](https://github.com/jamak/smoothlife-jl) in Julia.
* StatGenData.jl :: [Statistical analysis of genomic data](https://github.com/dmbates/StatGenData.jl)

### Neuroscience
* ElectroJulia.jl :: [Julia functions to process electroencephalographic recordings](https://github.com/sam81/ElectroJulia.jl)





8 changes: 8 additions & 0 deletions Chemistry.md
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* ChemicalKinetics.jl :: [Simulation, Bayesian inference and Bayesian model selection for chemical kinetics](https://github.com/scidom/ChemicalKinetics.jl) in Julia.
* Qlab.jl :: is a [data manipulation and analysis tool based on the Savitzky–Golay filter](https://github.com/blakejohnson/Qlab.jl) - a digital filter that can be applied to a set of digital data points for the purpose of smoothing the data to increase the signal-to-noise ratio without greatly distorting the signal. Savitzky and Golay's paper is one of the most widely cited papers in the "Analytical Chemistry" journal.
* Synchrony.jl :: [Coherence/phase-locking statistics](https://github.com/simonster/Synchrony.jl) in Julia.



17 changes: 17 additions & 0 deletions Physics.md
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* [Statistical Mechanics](#statisticalmechanics)


* auditory.jl :: [Auditory filterbanks in Julia](https://github.com/jfsantos/auditory.jl)
* CMSSW.jl :: [A work-in-progress wrapper for ROOT.jl](https://github.com/jpata/CMSSW.jl)
* Codata.jl :: https://github.com/kofron/Codata.jl
* HEP.jl :: [A collection of methods useful for HEP](https://github.com/jpata/HEP.jl)
* Physical.jl :: https://github.com/ggggggggg/Physical.jl
* Quantities.jl :: [Dimensions and Quantities](https://github.com/ElOceanografo/Quantities.jl)
* ROOT.jl :: [A toy experiment interfacing ROOT and Julia through FWLite](https://github.com/jpata/ROOT.jl). [ROOT](http:https://root.cern.ch) is a data analysis library widely used at experiments at CERN for HEP data analyses.
* ROOTDataFrames.jl :: [A wrapper for ROOT Trees through the Abstract DataFrame interface](https://github.com/jpata/ROOTDataFrames.jl)
* SALT.jl :: [SALT (steady-state ab-initio laser theory) solver package for Julia](https://github.com/xdavidliu/SALT.jl)
* Sparrow.jl :: [Visual Psychophysics package](https://github.com/rennis250/Sparrow.jl) for Julia.

### Statistical Mechanics
* IsingModels.jl :: [The Ising model as a Julian distribution](https://github.com/johnmyleswhite/IsingModels.jl)

4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -9,7 +9,9 @@ Mirrors:
* [Algorithms.md](https://github.com/svaksha/Julia.jl/blob/master/Algorithms.md) :: AI, DataMining, Data Structures, ML, NLP, ...
* [API.md](https://github.com/svaksha/Julia.jl/blob/master/API.md) :: API's for C++, Fortran, Go, Java, JavaScript, MATLAB, Perl, Python, R, ...
* [Benchmarks-Optimization.md](https://github.com/svaksha/Julia.jl/blob/master/Benchmarks-Optimization.md) :: Benchmarks and Optimization toolkits.
* [Biology.md](https://github.com/svaksha/Julia.jl/blob/master/Biology.md) :: Bioinformatics, genomics, agriculture, food science, medicine, genetic engineering, Neuroscience, et. al...
* [Build-Automation.md](https://github.com/svaksha/Julia.jl/blob/master/Build-Automation.md) :: Tools for continuous integration (CI), continuous delivery (CD), Packaging, release engineering (RE), release management (RM), software configuration management (SCM), etc...
* [Chemistry.md](https://github.com/svaksha/Julia.jl/blob/master/Chemistry.md) :: Analytical chemistry, cheminformatics, crystallography, nanochemistry, nuclear chemistry ...
* [Computer-Graphics.md](https://github.com/svaksha/Julia.jl/blob/master/Computer-Graphics.md) :: Plotting, Graphics and other Visualization tools.
* [Conferences-Papers.md](https://github.com/svaksha/Julia.jl/blob/master/Conferences-Papers.md) :: Julia-related Conferences (meetups, slides, talks, videos, etc..) and Research Papers (journal and conference publications).
* [Cookbook.md](https://github.com/svaksha/Julia.jl/blob/master/Cookbook.md) :: blogs, cookbooks, cheatsheets, IJulia NoteBooks, etc...
Expand All @@ -19,9 +21,9 @@ Mirrors:
* [i18n-L10n.md](https://github.com/svaksha/Julia.jl/blob/master/i18n-L10n.md) :: Transliteration, Internationalisation (i18n) and Localisation (L10n)
* [Mathematics.md](https://github.com/svaksha/Julia.jl/blob/master/Mathematics.md):: Algebra, Geometry,... anything Math related.
* [NEWS.md](https://github.com/svaksha/Julia.jl/blob/master/NEWS.md)
* [Physics.md](https://github.com/svaksha/Julia.jl/blob/master/Physics.md) :: Julia software related to Physics.
* [Programming-Concepts.md](https://github.com/svaksha/Julia.jl/blob/master/Programming-Concepts.md) :: Programming language concepts that are used in the type system, data types, etc..
* [QA.md](https://github.com/svaksha/Julia.jl/blob/master/QA.md) :: Test Driven Development, Sandbox, Functional/ Unit testing,... Quality-related tools.
* [Science.md](https://github.com/svaksha/Julia.jl/blob/master/Science.md) :: Astronomy, Biology, Chemistry, GIS, Meteorology, Physics,..
* [UI-UX.md](https://github.com/svaksha/Julia.jl/blob/master/UI-UX.md) :: User Interface software in Julia.
* [Utilities.md](https://github.com/svaksha/Julia.jl/blob/master/Utilities.md) :: Handy toolkits for your Desktop and other general utilities.
* [X-Platform-SW.md](https://github.com/svaksha/Julia.jl/blob/master/X-Platform-SW.md) :: Cross-Platform Software and API for Hardware arch. (ARM, MIPS, GPU, CUDA), language API, HPC, and other libraries.
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