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  • PopGen Vienna
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  • GenomeDelta Public

    Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

    genome fasta fastq bedtools samtools genome-analysis bwa-mem
    Shell 8 Other Updated Sep 30, 2024

  • DoubleTrouble Public

    Investigating TE invasion history in the melanogaster subgroup

    HTML Updated Aug 12, 2024

  • Dmel-200years Public

    11 TE invasions in 200 years in D. melanogaster

    Python Updated Apr 25, 2024

  • Dmel-Spoink Public

    Discovering the invasion of the TE Spoink in Drosophila melanogaster

    C 1 Updated Feb 13, 2024

  • Human-TE Public archive

    An approach to establish abundance and diversity of transposable elements (TE) in human populations using a reference library

    Python 3 Updated Sep 12, 2023