Query interface to get insights into data in Gen3 Commons
OpenAPI documentation available here.
YAML file for the OpenAPI documentation is found in the openapi folder (in
the root directory); see the README in that folder for more details.
poetry install
./run.pypython bin/setup_test_database.py --host postgres
mkdir -p tests/resources/keys; cd tests/resources/keys; openssl genrsa -out test_private_key.pem 2048; openssl rsa -in test_private_key.pem -pubout -out test_public_key.pem; cd -If needed, set environment variables to point to a specific Postgres instance.
export GDC_PG_HOST=postgres
export GDC_PG_USER=postgres
export GDC_PG_PASSWORD=""Run tests.
poetry run pytest -vv --cov=peregrine --cov-report xml testsYou can now deploy individual services via Helm! Please refer to the Helm quickstart guide HERE (https://github.com/uc-cdis/peregrine/blob/master/docs/quickstart_helm.md)