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University of Maryland
- College Park, MD
- http:https://www.robpatro.net
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git-archive-all.sh Public
Forked from fabacab/git-archive-all.shA bash shell script wrapper for git-archive that archives a git superproject and its submodules, if it has any.
Shell UpdatedJul 8, 2024 -
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test_sanitize_workflow Public
just for testing
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libradicl Public
Forked from NPSDC/libradiclRust BSD 3-Clause "New" or "Revised" License UpdatedJun 14, 2024 -
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granges Public
Forked from vsbuffalo/grangesA Rust library and command line tool for working with genomic ranges and their data.
Rust UpdatedMay 29, 2024 -
ggcat Public
Forked from algbio/ggcatCompacted and colored de Bruijn graph construction and querying
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genomap Public
Forked from vsbuffalo/genomapA Rust library for storing generic genomic data by sorted chromosome name
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sshash Public
Forked from jermp/sshashA compressed, associative, exact, and weighted dictionary for k-mers.
C++ MIT License UpdatedDec 19, 2023 -
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libdivsufsort Public
Forked from y-256/libdivsufsortA lightweight suffix-sorting library
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libdivsufsort-rs Public
Forked from baku4/libdivsufsort-rsA rust wrapper for libdivsufsort
Rust MIT License UpdatedNov 8, 2023 -
FQFeeder Public
Self-contained, multi-threaded fasta/q parser
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tximport Public
Forked from thelovelab/tximportImport and summarize transcript-level estimates for gene-level analysis
R UpdatedOct 6, 2023 -
path-tools Public
A simple rust crate for more conveniently performing some operations with paths
Rust BSD 3-Clause "New" or "Revised" License UpdatedSep 30, 2023 -
bibget Public
Forked from nathansam/bibgetGenerate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.
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metagraph Public
Forked from ratschlab/metagraphScalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
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ANTISEQUENCE Public
Forked from noahcape/ANTISEQUENCERust library for processing sequencing reads.
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kmers Public
Forked from theJasonFan/kmersA bit-packed k-mer representation (and relevant utilities) for rust
Rust BSD 3-Clause "New" or "Revised" License UpdatedMar 30, 2023 -
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pthash Public
Forked from jermp/pthashFast and compact minimal perfect hash functions in C++.
C++ MIT License UpdatedFeb 10, 2023 -
cuttlefish Public
Forked from theJasonFan/cuttlefishBuilding the compacted de Bruijn graph efficiently from references or reads.
C++ BSD 3-Clause "New" or "Revised" License UpdatedJan 14, 2023 -
essentials Public
Forked from jermp/essentialsEssential C++ utilities.
C++ MIT License UpdatedJan 8, 2023 -
LaPreprint Public template
Forked from LaPreprint/LaPreprint📝 A nicely formatted LaTeX preprint template
TeX MIT License UpdatedDec 20, 2022 -
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