CellComNet: Integrating potential ligand-receptor interactions and single-cell RAN sequencing data for cell-cell communication inference
Data is available at uniprot, GEO.
Install python3 for running this code. And these packages should be satisfied:
- tensorflow == 1.14.0
- keras == 2.3.0
- pandas == 1.1.5
- numpy == 1.19.3
- scikit-learn == 0.24.2
- pai4sk == 0.1.5
To run the model, default 5 fold cross validation
python code/CellComNet.py