-
dockerfiles Public
A collection of Dockerfiles for different containers I use.
-
phylociraptor Public
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
-
annocomba Public
Automated genome annotation pipeline combining MAKER and funannotate with singularity and snakemake
-
amplicon_sorter Public
Forked from avierstr/amplicon_sorterSorts amplicons from Nanopore sequencing data based on similarity
Python UpdatedAug 29, 2024 -
immediate-submit Public
Immediate_submit script used in many of our snakemake HPC pipelines
Python UpdatedJul 31, 2024 -
-
reproducibility-workshop Public
Materials for the course "Reproducibility in Bioinformatics"
-
iqtreeGUI Public
iqtreeGUI - A graphical user interface for IQ-TREE
-
demogenas Public
Forked from chrishah/demogenasdemocratizing genome assembly
Python UpdatedNov 16, 2023 -
concat Public
python script to create concatenated FASTA files for phylogenetic analyses from single locus alignments. concat.py replaces most scripts in the phylo-scripts repository
Python UpdatedSep 19, 2023 -
-
genomics Public
some scripts I use in my genomic data analysis workflow
-
binner Public
Run multiple metagenome filtering programs using Docker containers
-
LFS-cazy-comparative Public
All code for the comparative genome analyses performed in the Resl et. al (2022) NComms paper
-
-
funannotate-docker Public
Docker container for the funannotate genome annotation pipeline
-
Bash-Oneliner Public
Forked from onceupon/Bash-OnelinerA collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
MIT License UpdatedMay 23, 2022 -
homestack Public
Settings and installation instructions for my rpis at home
Shell UpdatedDec 15, 2021 -
-
-
quickblast Public
Script to create a blastdb and quickly blast sequences against it
Shell UpdatedJul 26, 2021 -
-
funannotate Public
Forked from nextgenusfs/funannotateEukaryotic Genome Annotation Pipeline
Python BSD 2-Clause "Simplified" License UpdatedJan 14, 2021 -
Mitochondrial_genome_assembly Public
Forked from SamLMG/Mitochondrial_genome_assemblyPython UpdatedNov 3, 2020 -
-
SACCHARIS Public
Forked from DallasThomas/SACCHARISImprove functional predictions of uncharacterized sequences for any CAZyme or CBM family
-
-
-
correlate Public
R package for character correlation analyses with phylogenetic trees
-
haikubuilddocker Public
Forked from andponlin/haikubuilddockerDocker image setup for building Haiku operating system.
Shell MIT License UpdatedJan 26, 2018
{{ message }}