Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata templ…

Estimate SC2 lineage abundances from wastewater samples

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

Streamlit — A faster way to build and share data apps.

A Gradio web UI for Large Language Models.

AnimateDiff for AUTOMATIC1111 Stable Diffusion WebUI

WebUI extension for ControlNet

Analyzing and visualizing KEGG information using the grammar of graphics

A practical introduction to long-read bioinformatics for bacterial genome reconstruction in the context of the Kenya MISSIoN project.

A new markup-based typesetting system that is powerful and easy to learn.

A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

A pipeline for running AMRfinderPlus and collating results into functional classes

Bayesian inference of ancestral dates on bacterial phylogenetic trees

Pod5: a high performance file format for nanopore reads.

Super Resolution for images using deep learning.

Harmonization of AMR predictor tool outputs

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

Plot voltage-temperature from an Osan Pathfinder SQLite database file

Protein visualization without the pain

Collection of R scripts for SARS-CoV-2 (variant) analyses

map Illumina metagenomes to genomes!

A library of free open source icons for science illustrations in biology and chemistry

Metagenomics-related extended functionalities to samtools

ARTIC SARS-CoV-2 workflow and reporting

Chrome extension to return youtube dislikes

This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.