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MinKNOW/Guppy update needs new model for R10.4.1 5 kHz #254
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Thanks, @hoelzer! The I added the full err file: |
Hey, thanks for testing @MarieLataretu ! Hm, I did not change anything else besides the Medaka version and everything installed successfully according to conda. I can try to add a
to the container build. |
yeah, let's give it a try! |
|
And I deleted already the non-working container |
perfect, |
In a recent MinKNOW/Guppy (v6.5.7) update, the sampling rate for R10.4.1 FCs was increased from 4 kHz to 5 kHz. In Guppy (v6.5.7), there is a new model for 5 kHz:
DNA r10.4.1 e8.2 400bps 5khz
The corresponding Medaka v1.8.0 model for 5 kHz data is
r1041_e82_400bps_sup_v4.2.0
In the current ARTIC container we are using, Medaka is v1.7.2. Thus, I created a new ARTIC container w/ Medaka v1.8.0 and the most recent models:
nanozoo/artic:1.3.0-dev--e22cdbc
I suggest, after testing, adding that new container to the pipeline also to allow variant calling with recent Medaka models.
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