bioinformatics-algorithms

Python implementation of bioinformatics algorithms and useful functions.

Status

This project is under active development.

Please see the manual notebook.

This code was written by Renata Wong (https://renatawong.github.io/).

Name		Name	Last commit message	Last commit date
Latest commit History 101 Commits
text_files		text_files
LICENSE		LICENSE
README.md		README.md
approximate_pattern_matching.py		approximate_pattern_matching.py
bioinformatics_manual.ipynb		bioinformatics_manual.ipynb
count_kmer_occurrences.py		count_kmer_occurrences.py
find_kmer_clumps.py		find_kmer_clumps.py
frequent_kmers.py		frequent_kmers.py
frequent_kmers_mismatch_reverse_complement.py		frequent_kmers_mismatch_reverse_complement.py
frequent_kmers_with_mismatches.py		frequent_kmers_with_mismatches.py
gibbs_sampler.py		gibbs_sampler.py
greedy_motif_search.py		greedy_motif_search.py
hamming_distance.py		hamming_distance.py
kmer_genome_match.py		kmer_genome_match.py
median_string_problem.py		median_string_problem.py
minimum_skew_problem.py		minimum_skew_problem.py
motif_entropy.py		motif_entropy.py
motif_enumeration.py		motif_enumeration.py
neighbours.py		neighbours.py
profile_most_probable_kmer.py		profile_most_probable_kmer.py
randomized_motif_search.py		randomized_motif_search.py
reverse_complement.py		reverse_complement.py