This repo contains all code, statistics, and figures for:

Multiple generations of antibiotic exposure and isolation influence host fitness and the microbiome in a model zooplankton species. Cooper RO, Tjards S, Hotovy J, Nguyen, D, Cressler CE.

Raw 16S rRNA data are available on NCBI under BioProject PRJNA703930. A phyloseq object containing the dada2-processed 16S data is available in the data folder, named 16s.rds.