ADER19F - Analysis of Differential Expression with RNAseq

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

R toolkit for single cell genomics

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

A Shiny R app for microbiome visualisation

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

Web application

PartitionFinder discovers optimal partitioning schemes for DNA sequences.

A quality control analysis tool for high throughput sequencing data

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Chromosome-level scaffolding using multiple references

Bioinformatics Lab Final Project for 3rd Year IPS Bioinformatic Students

Repo to host the "Lab. bioinformática" classes

The second version of the Kraken taxonomic sequence classification system

Toolkit for processing sequences in FASTA/Q formats