fix tests for h5netcdf v0.12 #6097
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@mathause See h5netcdf/h5netcdf#100. Are the CI errors connected to changes in |
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@mathause I think it would be great to test |
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There is an annoying amount of upstream failures. I just merged main - that should help a bit but unfortunately there are still open issues.
Let's see what the CI says now. |
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I had a look at the tests & the failures are unrelated to h5netcdf. @kmuehlbauer if you are happy with the changes I would merge soon. |
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@mathause I think it looks good. Thanks. |
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thanks for the review! |
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* upstream/main: fix tests for h5netcdf v0.12 (pydata#6097)
dcherian
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* main: [pre-commit.ci] pre-commit autoupdate (pydata#6115) Make CI pass by limiting dask version (pydata#6111) Fix mypy precommit (pydata#6110) [pre-commit.ci] pre-commit autoupdate (pydata#6088) Add type definitions in prep for pydata#6086 (pydata#6090) Replace distutils.version with packaging.version (pydata#6096) Attempt datetime coding using cftime when pandas fails (pydata#6049) fix tests for h5netcdf v0.12 (pydata#6097) disable pytest-xdist (to check CI failure) (pydata#6077) cftime: 'gregorian' -> 'standard' [test-upstream] (pydata#6082) Add release note skeleton for 0.21 (pydata#6061)
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Closes #5734 Closes #4473 Closes #4498 Closes #659 Closes #2237 xref https://github.com/pangeo-data/pangeo/issues/271 Co-authored-by: Anderson Banihirwe <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Illviljan <[email protected]> Co-authored-by: Mathias Hauser <[email protected]> Co-authored-by: Stephan Hoyer <[email protected]> Squashed commit of the following: commit 2e3dca8011bc26e937597ed436a39a6ca7c130d5 Merge: 3ab03ee09 c34ef8a60 Author: Anderson Banihirwe <[email protected]> Date: Thu May 12 17:49:31 2022 -0600 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit 3ab03ee0960b15a03d68a54000a90a17ea464e8f Merge: ad33d8512 11041bdfd Author: Anderson Banihirwe <[email protected]> Date: Wed May 11 13:31:45 2022 -0600 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit ad33d85123dc28a374b1dfee41a2a35aba4a654c Author: dcherian <[email protected]> Date: Tue May 10 13:20:02 2022 -0600 Deduplicate commit fd20ba2d7447331bed47030fa80bf20735835a1f Author: dcherian <[email protected]> Date: Tue May 10 11:54:00 2022 -0600 Update whats-new commit 67cda8a552c647795a5480ced99d4f8f14cb3518 Author: Illviljan <[email protected]> Date: Mon May 9 22:16:50 2022 +0200 Ignore typing when flox is not available commit d711d5804efc9c29a2960d765675550cf4d92c18 Merge: 33f70dae4 4b7683112 Author: Illviljan <[email protected]> Date: Mon May 9 20:48:20 2022 +0200 Merge branch 'main' into pr/5734 commit 33f70dae4342897577c2bf98e7e8bddc8283585a Merge: c38ef7868 4a384fd06 Author: Illviljan <[email protected]> Date: Thu May 5 23:21:23 2022 +0200 Merge branch 'groupby-aggs-using-numpy-groupies' of https://github.com/andersy005/xarray into pr/5734 commit c38ef78687a63ad6d7211c0a9a70f1fdd25ab528 Author: Illviljan <[email protected]> Date: Thu May 5 23:21:09 2022 +0200 Update resample.py commit 4a384fd06786d4dce52538a991d609b95670753f Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu May 5 21:13:23 2022 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 2ee1de40d4b0e343ff120c744a43e45ef2508ed5 Merge: 32828090d 4f7ef6d1c Author: Illviljan <[email protected]> Date: Thu May 5 23:11:21 2022 +0200 Merge branch 'groupby-aggs-using-numpy-groupies' of https://github.com/andersy005/xarray into pr/5734 commit 32828090d0c031e3ad0b13ff7e04832f61265749 Author: Illviljan <[email protected]> Date: Thu May 5 23:09:01 2022 +0200 Copy/paste instead of a for loop Hopefully mypy will be satisfied commit 4f7ef6d1c94fb431b335d07e6cfd092d3b1a9957 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu May 5 20:36:23 2022 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 1ac3281242c0a9d73e579c0aa14eb481e513dd63 Merge: 444feee5c 6fbeb1310 Author: Illviljan <[email protected]> Date: Thu May 5 22:34:09 2022 +0200 Merge branch 'main' into pr/5734 commit 444feee5c0176390f4e0bf95a32decf179e5d9f2 Author: Illviljan <[email protected]> Date: Thu May 5 22:32:19 2022 +0200 Try subclassing to ResampleBase-classes Resample assumes having self._group_dim but that was never defined earlier, mypy should complain about this if the class was typed. commit ac49bfa5307aebfb849597e5049e24a725df17ee Author: Illviljan <[email protected]> Date: Thu May 5 20:55:45 2022 +0200 Update resample.py commit 4705b6cdc7e6d4c5f6e7c02317b605d172d45242 Author: Illviljan <[email protected]> Date: Thu May 5 20:46:49 2022 +0200 Update _reductions.py commit 687beacc4696008489b00a68335f674b1b0719ba Author: Illviljan <[email protected]> Date: Thu May 5 20:19:53 2022 +0200 Update _reductions.py commit 7a58590561fef1fc1714c71443b61b4553bdfded Author: Illviljan <[email protected]> Date: Thu May 5 20:02:30 2022 +0200 Test adding back dummy methods. commit 7869ad5ef595ffaeb19e6c3f977a3603db51356d Merge: 36c206ede 126051f2b Author: Anderson Banihirwe <[email protected]> Date: Wed May 4 21:50:36 2022 -0600 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit 36c206ede789c1567f6d4fd7baa0746c6877aae1 Author: dcherian <[email protected]> Date: Wed May 4 09:15:40 2022 -0600 Clean up resampling. Add Resample._flox_reduce. Change inheritance order to make things work. commit b2b3001255bf440e9f2907297d091ae4b02dbc28 Author: dcherian <[email protected]> Date: Tue May 3 09:58:01 2022 -0600 [skip-ci] Fix whats-new. commit 6902de318e15f88d9dd33479a2e061ad318c3ef0 Author: dcherian <[email protected]> Date: Tue May 3 09:18:25 2022 -0600 Better defaults for resample commit 7dab7308d330e1ca833038f89479959fbff2426e Author: dcherian <[email protected]> Date: Tue May 3 09:13:24 2022 -0600 [skip-ci] add whats-new commit 7d9b4709353e1562b44cd299a5e8b62913bd9ea1 Author: Deepak Cherian <[email protected]> Date: Tue May 3 08:50:22 2022 -0600 Update ci/requirements/min-all-deps.yml commit 2d1de0fcd08fe135bb721ee8382a0d54282529f2 Author: dcherian <[email protected]> Date: Mon May 2 14:38:06 2022 -0600 Add flox to min_all_deps commit 5337bd4160d5c73cf145c4710b40e2ece8aef737 Merge: 5583e342c cf8f1d6fc Author: dcherian <[email protected]> Date: Mon May 2 14:28:09 2022 -0600 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: [pre-commit.ci] pre-commit autoupdate (#6562) Run mypy tests (but always pass) (#6557) Update issue template to include a checklist (#6522) Remove duplicate tests, v3 (#6550) Skip mypy tests in CI (#6552) Direct usage questions to GH discussions (#6539) Revert "Attempt to improve CI caching (#6534)" (#6543) Revert "Remove duplicate tests (#6536)" (#6540) Remove duplicate tests (#6536) Add a slighly cheesy contributors panel to readme (#6520) Fix doctest & mypy CI jobs (#6535) Attempt to improve CI caching (#6534) Attempt to consolidate tests in CI (#6533) Restrict annotations to a single run in GHA (#6532) Fix some mypy issues (#6531) Pin version of black in pre-commit blackdoc (#6492) Scale numfocus image in readme (#6519) Use new importlib.metadata.entry_points interface where available. (#6516) Add a badge for binder (#6518) Bump codecov/codecov-action from 3.0.0 to 3.1.0 (#6509) commit 5583e342cc187d6f14bf43cc36c53d9916345e58 Author: dcherian <[email protected]> Date: Mon Apr 25 20:50:03 2022 -0600 Set default to "split-reduce" to reduce surprises commit eae37e2fd629abe2558f230b2f496b49cfd4c8a6 Author: dcherian <[email protected]> Date: Mon Apr 25 20:45:44 2022 -0600 Properly support numeric_only commit fcef26fe30cde5f1e5b41b94d1be0f65cb66fc6d Merge: 3a7052e66 d0a412a0e Author: dcherian <[email protected]> Date: Sat Apr 23 18:48:41 2022 -0600 Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray: Update ci/requirements/environment-windows.yml commit 3a7052e66f3d287247759733a29a7118ea5c4f22 Author: dcherian <[email protected]> Date: Sat Apr 23 18:47:30 2022 -0600 Support numeric_only commit 56272775242b96cd5cbe416184b30aa0b8b2f1e7 Merge: d61377964 33cdabd26 Author: dcherian <[email protected]> Date: Sat Apr 23 18:26:23 2022 -0600 Merge branch 'main' into groupby-aggs-using-numpy-groupies * main: (26 commits) Remove xarray.ufuncs (#6491) Convert readme to markdown (#6495) HTML repr fix for Furo Sphinx theme (#6501) Restrict stalebot on projects & milestones (#6498) Ensure datetime-like variables are left unmodified by `decode_cf_variable` (#6489) Add link to xarray binder to readme (#6494) Add details section to issue template (#6486) [skip-ci] Redirect raster analysis questions to rioxarray (#6455) Accessing the Exception message via e.args[0] (#6451) Add support in the "zarr" backend for reading NCZarr data (#6420) Propagate MultiIndex variables in broadcast (#6477) Fix whatnsew build error (#6480) allow other and drop arguments in where (gh#6466) (#6467) [pre-commit.ci] pre-commit autoupdate (#6472) Fix `xr.where(..., keep_attrs=True)` bug (#6461) Fix `Number` import (#6474) Support **kwargs form in `.chunk()` (#6471) Bump actions/upload-artifact from 2 to 3 (#6468) Bump codecov/codecov-action from 2.1.0 to 3.0.0 (#6470) Bump actions/download-artifact from 2 to 3 (#6469) ... commit d0a412a0e7fdfdc2f8cc02dfcf6279ededfea586 Author: Deepak Cherian <[email protected]> Date: Wed Apr 13 11:36:40 2022 -0600 Update ci/requirements/environment-windows.yml commit d2510c028802cce4a1aab6b0694b3b007dc335ad Merge: d61377964 b4c943e80 Author: Deepak Cherian <[email protected]> Date: Wed Apr 13 11:36:10 2022 -0600 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit d613779646d8ec77f852eb0558fbdc3bb474874b Author: dcherian <[email protected]> Date: Sun Apr 10 08:41:09 2022 -0600 fix commit da31c4f8771bf15d7b608f5cdf47c872aa457cf5 Merge: 3580ae3ca 158314abf Author: dcherian <[email protected]> Date: Sun Apr 10 08:32:33 2022 -0600 Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray: [pre-commit.ci] auto fixes from pre-commit.com hooks commit 3580ae3ca1b7e93b9ec83636b7d9b5ab678e6bd9 Author: dcherian <[email protected]> Date: Sun Apr 10 08:31:20 2022 -0600 fix commit 158314abfcdfbfc2c69bc174f7ae1b6acb78f106 Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Sun Apr 10 14:31:00 2022 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 628406c8cab3021eff84ef679bf47b56dba42ec9 Merge: 4dd9e661d 812ce3339 Author: dcherian <[email protected]> Date: Sun Apr 10 08:29:30 2022 -0600 Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray: [skip-ci] Apply suggestions from code review commit 812ce333957224c8193a1ef53de8fc99ff600439 Author: Deepak Cherian <[email protected]> Date: Sun Apr 10 08:29:24 2022 -0600 [skip-ci] Apply suggestions from code review Co-authored-by: Illviljan <[email protected]> commit 4dd9e661def401105589d42bfd14a7bc3e48eb3c Author: dcherian <[email protected]> Date: Sun Apr 10 08:27:09 2022 -0600 Update envs commit 9d4ee11bb6be58b00a382e6af7e7f6b781d3e80d Author: Deepak Cherian <[email protected]> Date: Sun Apr 10 08:25:20 2022 -0600 [skip-ci] Apply suggestions from code review Co-authored-by: Illviljan <[email protected]> commit c176f8d21faa94929db1ee1609e9edc7a9556e41 Author: dcherian <[email protected]> Date: Wed Mar 30 15:52:26 2022 +0530 Test cleanup commit fd6aa17743cb360c6587309fa92ac0fd290a590b Author: dcherian <[email protected]> Date: Wed Mar 30 13:23:34 2022 +0530 fix commit 87f94ba854277f65641b585b83b6edd5cbdc4756 Merge: 1a918021a facafac35 Author: Anderson Banihirwe <[email protected]> Date: Thu Apr 7 12:09:53 2022 -0600 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit 1a918021abb66033dc18498f50ce52bf4beae8e6 Merge: 2694dbea6 2e93d549d Author: dcherian <[email protected]> Date: Tue Mar 29 19:44:12 2022 +0530 Merge branch 'main' into groupby-aggs-using-numpy-groupies * main: (23 commits) Vectorize groupby binary ops (#6160) Speed-up multi-index html repr + add display_values_threshold option (#6400) [pre-commit.ci] pre-commit autoupdate (#6422) Fix concat scalar coord dtype (#6418) use the `DaskIndexingAdapter` for `duck dask` arrays (#6414) Weighted quantile (#6059) upgrade `sphinx` (#6415) Add kwarg-only breaking change to whats-new (#6409) [pre-commit.ci] pre-commit autoupdate (#6396) fix DataArray groupby returning a Dataset (#6394) reindex: fix missing variable metadata (#6389) [skip-ci] Add benchmarks for groupby math (#6390) Fix concat with scalar coordinate (#6385) isel: convert IndexVariable to Variable if index is dropped (#6388) fix dataset groupby combine dataarray func (#6386) fix concat with variable or dataarray as dim (#6387) #6367 Fix for time units checking could produce "unhashable type" error (#6368) Explicit indexes (#5692) Remove test_rasterio_vrt_network (#6371) Allow write_empty_chunks to be set in Zarr encoding (#6348) ... commit 2694dbea60310d83a02e91727c1de71f0eec4ec6 Author: dcherian <[email protected]> Date: Sun Mar 13 11:10:49 2022 +0530 Test flox kwargs commit e4125831e4c86df4752666bf27344fce99c77b02 Author: dcherian <[email protected]> Date: Sun Mar 13 11:10:30 2022 +0530 Fix. commit 705b3f00e001b93e5531b7801c48bbe98a4ffba1 Merge: 26d85d526 d535a3bf4 Author: dcherian <[email protected]> Date: Sun Mar 13 09:52:51 2022 +0530 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: Run pyupgrade on core/groupby (#6351) commit 26d85d5260a38e00f903e689b3819d51fb29f689 Author: dcherian <[email protected]> Date: Sun Mar 13 09:43:45 2022 +0530 loooser test commit a1769baf158629e84b6258069a22904de8f37fc4 Author: dcherian <[email protected]> Date: Sun Mar 13 09:34:58 2022 +0530 polish commit 94bcb32de46a152031b0da048d164608f7aa77c4 Merge: 62474a825 229dad93e Author: dcherian <[email protected]> Date: Sun Mar 13 09:27:55 2022 +0530 Merge branch 'main' into groupby-aggs-using-numpy-groupies * main: Generate reductions for DataArray, Dataset, GroupBy and Resample (#5950) explicitly install `ipython_genutils` (#6350) commit 62474a825edcd04567589d86db5f62a2b5ba5ec2 Merge: e348c7601 434db03e2 Author: dcherian <[email protected]> Date: Thu Mar 10 10:12:59 2022 -0700 Merge branch 'generate-reductions-class' into groupby-aggs-using-numpy-groupies * generate-reductions-class: (31 commits) polish update _reductions Fixes Apply suggestions from code review Fix path manual tweaks to make ci happy Update _reductions.py Write to file using open() instead. force keyword args after dim Annotate some reduction tests. Update xarray/util/generate_reductions.py Update xarray/util/generate_reductions.py add doctests more reduce another reduce one more reduce more reduce edits make reduce args consistent updates [pre-commit.ci] auto fixes from pre-commit.com hooks ... commit 434db03e2f0d8e2c30b991c0866b80eb46348621 Author: dcherian <[email protected]> Date: Thu Mar 10 09:47:58 2022 -0700 polish commit e348c76012f7d33cdf84ece5ed00ddc6b59d5cf8 Merge: 3f3a197c8 d293f50f9 Author: dcherian <[email protected]> Date: Wed Mar 9 09:43:30 2022 -0700 Merge branch 'main' into groupby-aggs-using-numpy-groupies * main: (68 commits) Bump actions/setup-python from 2 to 3 (#6338) Bump actions/checkout from 2 to 3 (#6337) In documentation on adding a new backend, add missing import and tweak headings (#6330) Lengthen underline, correct spelling, and reword (#6326) quantile: use skipna=None (#6303) New whatsnew section v2022.03.0 release notes (#6319) fix typos (using codespell) (#6316) Add General issue template (#6314) Disable CI runs on forks (#6315) Enable running sphinx-build on Windows (#6237) Fix class attributes versus init parameters (#6312) On Windows, enable successful test of opening a dataset containing a cftime index (#6305) from_dict: doctest (#6302) Drop duplicates over multiple dims, and add Dataset.drop_duplicates (#6307) Amended docs on how to add a new backend (#6292) Adding the new wrapper gsw-xarray (#6294) Amended docstring to reflect the actual behaviour of Dataset.map (#6232) Align language def in bugreport.yml with schema (#6290) Move Zarr up in io.rst (#6289) ... commit d5f627cf67204b78957a3bbc6147c455e54d080b Author: dcherian <[email protected]> Date: Tue Mar 8 17:48:00 2022 -0700 update _reductions commit ebe9985a328ca26ecc008719998d597d350c97de Merge: 1fcd0808d d293f50f9 Author: dcherian <[email protected]> Date: Tue Mar 8 17:44:58 2022 -0700 Merge branch 'main' into generate-reductions-class * main: (71 commits) Bump actions/setup-python from 2 to 3 (#6338) Bump actions/checkout from 2 to 3 (#6337) In documentation on adding a new backend, add missing import and tweak headings (#6330) Lengthen underline, correct spelling, and reword (#6326) quantile: use skipna=None (#6303) New whatsnew section v2022.03.0 release notes (#6319) fix typos (using codespell) (#6316) Add General issue template (#6314) Disable CI runs on forks (#6315) Enable running sphinx-build on Windows (#6237) Fix class attributes versus init parameters (#6312) On Windows, enable successful test of opening a dataset containing a cftime index (#6305) from_dict: doctest (#6302) Drop duplicates over multiple dims, and add Dataset.drop_duplicates (#6307) Amended docs on how to add a new backend (#6292) Adding the new wrapper gsw-xarray (#6294) Amended docstring to reflect the actual behaviour of Dataset.map (#6232) Align language def in bugreport.yml with schema (#6290) Move Zarr up in io.rst (#6289) ... commit 1fcd0808d3f925ecd5bb4f03c94d70136a332487 Author: dcherian <[email protected]> Date: Tue Mar 8 16:59:43 2022 -0700 Fixes commit 9799d87f1e45f2e20a55bab13af63f2d895666ee Author: Deepak Cherian <[email protected]> Date: Tue Mar 8 16:57:55 2022 -0700 Apply suggestions from code review Co-authored-by: Stephan Hoyer <[email protected]> commit 7b34077c1355d006155abf3cdb5bc289caae96a9 Author: dcherian <[email protected]> Date: Wed Feb 16 09:50:49 2022 -0700 Fix path commit cd51a15c3a779a2e11c47677887ba818e3b3162a Merge: 8336c53c3 18703bafe Author: dcherian <[email protected]> Date: Wed Feb 16 09:46:04 2022 -0700 Merge branch 'main' into generate-reductions-class * main: (32 commits) Small typing fix (#6159) Drop support for python 3.7 (#5892) _season_from_months can now handle np.nan (#5876) Use base ImportError not MoudleNotFoundError when trying to see if the (#6154) Remove numpy from mypy pre-commit (#6151) Change concat dims to be Hashable (#6121) Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0 (#6147) Remove registration of pandas datetime converter in plotting (#6109) Remove pd.Panel checks (#6145) Remove paren from DataArray.from_dict docstring (#6140) Revert "Deprecate bool(ds) (#6126)" (#6141) remove paren from data that is fed to 1D DataArray (#6139) Check for just `...`, rather than `[...]` in `da.stack` (#6132) DOC: Add "auto" to dataarray `chunk` method (#6068) TST: check datetime converter is Matplotlibs (#6128) New algorithm for forward filling (#6118) Limit and format number of displayed dimensions in repr (#5662) Add labels to dataset diagram (#6076) Deprecate bool(ds) (#6126) Revert "disable pytest-xdist (to check CI failure)" (#6127) ... commit 3f3a197c83867cca5545b1032ed1b5312d9ab51b Merge: c157fca5f 4c865d607 Author: Anderson Banihirwe <[email protected]> Date: Thu Jan 13 15:07:31 2022 -0700 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit c157fca5f9b104be66a335e4190e853400ff7ce7 Merge: 2c2e7dcd1 bc28eda79 Author: dcherian <[email protected]> Date: Wed Jan 12 17:02:49 2022 -0700 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: Add tests for groupby math (#6137) commit 2c2e7dcd164661601595071cafd5b8e6a00bcb10 Merge: 41e43fe22 18703bafe Author: dcherian <[email protected]> Date: Wed Jan 12 11:18:24 2022 -0700 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: (23 commits) Small typing fix (#6159) Drop support for python 3.7 (#5892) _season_from_months can now handle np.nan (#5876) Use base ImportError not MoudleNotFoundError when trying to see if the (#6154) Remove numpy from mypy pre-commit (#6151) Change concat dims to be Hashable (#6121) Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0 (#6147) Remove registration of pandas datetime converter in plotting (#6109) Remove pd.Panel checks (#6145) Remove paren from DataArray.from_dict docstring (#6140) Revert "Deprecate bool(ds) (#6126)" (#6141) remove paren from data that is fed to 1D DataArray (#6139) Check for just `...`, rather than `[...]` in `da.stack` (#6132) DOC: Add "auto" to dataarray `chunk` method (#6068) TST: check datetime converter is Matplotlibs (#6128) New algorithm for forward filling (#6118) Limit and format number of displayed dimensions in repr (#5662) Add labels to dataset diagram (#6076) Deprecate bool(ds) (#6126) Revert "disable pytest-xdist (to check CI failure)" (#6127) ... commit 41e43fe22e39179310032b7b9927e094721e332f Author: dcherian <[email protected]> Date: Wed Dec 29 17:08:38 2021 -0700 fix tests commit 70266e176b60763dc84dc8c6852039014c0032c6 Author: dcherian <[email protected]> Date: Wed Dec 29 11:30:34 2021 -0700 fix tests commit 4fb17b14d7e603abd8c16a2f68d0dfbf5272ca8b Merge: bdb999fa4 2cb95a82b Author: dcherian <[email protected]> Date: Wed Dec 29 09:48:28 2021 -0700 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: Replace markdown issue templates with issue forms (#6119) Remove lock kwarg (#5912) Remove pre-commit GHA workflow (#6120) is_dask_collection: micro optimization (#6107) Revert "Single matplotlib import (#5794)" (#6064) Add support for cross product (#5365) assert ds errors in test_backends (#6122) assert ds errors in test_dataset.py (#6123) commit bdb999fa4d564148bfd669d8f91c4c509443cb9a Author: dcherian <[email protected]> Date: Wed Dec 29 09:47:59 2021 -0700 fix tests commit e1ba8a2affa270b72b28812db8d53eebb32e3d29 Author: dcherian <[email protected]> Date: Tue Dec 28 11:27:29 2021 -0700 use_numpy_groupies → use_flox commit ad6b5bcb5a1817933f9d1e360a5749c9812ccaf8 Merge: 1875fd20a 5d30f96e9 Author: dcherian <[email protected]> Date: Tue Dec 28 11:23:49 2021 -0700 Merge branch 'main' into groupby-aggs-using-numpy-groupies * main: [pre-commit.ci] pre-commit autoupdate (#6115) Make CI pass by limiting dask version (#6111) Fix mypy precommit (#6110) [pre-commit.ci] pre-commit autoupdate (#6088) Add type definitions in prep for #6086 (#6090) Replace distutils.version with packaging.version (#6096) Attempt datetime coding using cftime when pandas fails (#6049) fix tests for h5netcdf v0.12 (#6097) disable pytest-xdist (to check CI failure) (#6077) cftime: 'gregorian' -> 'standard' [test-upstream] (#6082) Add release note skeleton for 0.21 (#6061) commit 8336c53c334a1bec8e6a1fc8ab7448784492d6e2 Merge: 74064b957 3960ea3ba Author: Illviljan <[email protected]> Date: Mon Dec 27 08:01:05 2021 +0100 Merge branch 'main' into pr/5950 commit 74064b957cb7c5d0dacec9708d17126fa11886bd Author: Illviljan <[email protected]> Date: Tue Dec 21 23:03:05 2021 +0100 manual tweaks to make ci happy commit 16372a55080c7abcd513ee60fe776e503fb568de Merge: b78df18bd b40678934 Author: Illviljan <[email protected]> Date: Tue Dec 21 22:49:20 2021 +0100 Merge branch 'generate-reductions-class' of https://github.com/dcherian/xarray into pr/5950 commit b78df18bd11c496a4d5666c6972fb5d2f86e29d3 Author: Illviljan <[email protected]> Date: Tue Dec 21 22:49:07 2021 +0100 Update _reductions.py commit bc55db33e63b10ef01e7c12518fcd7731e6d7d96 Author: Illviljan <[email protected]> Date: Tue Dec 21 22:48:57 2021 +0100 Write to file using open() instead. commit 3dc94ae47165616878023b56a02b731549f920db Author: Illviljan <[email protected]> Date: Tue Dec 21 21:42:00 2021 +0100 force keyword args after dim commit 66151f62098818c6448213a906691cd4d1c1f026 Merge: cd8a898d5 dbc02d4e5 Author: Illviljan <[email protected]> Date: Tue Dec 21 21:38:06 2021 +0100 Merge branch 'main' into pr/5950 commit 1875fd20a46d0058cd83b2e3a56f4633d6b5853e Merge: 638d98a70 dbc02d4e5 Author: Anderson Banihirwe <[email protected]> Date: Thu Dec 16 07:21:47 2021 -0700 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit b4067893470e7badd5bfa90f0dbb43eeac4c89f8 Merge: 45feeaba8 5db404659 Author: Deepak Cherian <[email protected]> Date: Thu Nov 25 21:53:08 2021 -0700 Merge remote-tracking branch 'upstream/main' into generate-reductions-class * upstream/main: Fixed a mispelling of dimension in dataarray documentation for from_dict (#6020) [pre-commit.ci] pre-commit autoupdate (#6014) commit 45feeaba8f3f19c8740da061a33839c5b2cf2ece Author: Deepak Cherian <[email protected]> Date: Thu Nov 25 21:52:06 2021 -0700 Annotate some reduction tests. commit 638d98a703ab53ab1d1e0ead58a425b30c712e73 Merge: 3c51b1a3e 5db404659 Author: Deepak Cherian <[email protected]> Date: Thu Nov 25 21:42:56 2021 -0700 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: Fixed a mispelling of dimension in dataarray documentation for from_dict (#6020) [pre-commit.ci] pre-commit autoupdate (#6014) [pre-commit.ci] pre-commit autoupdate (#5990) Use set_options for asv bottleneck tests (#5986) Fix module name retrieval in `backend.plugins.remove_duplicates()`, plugin tests (#5959) commit 2a1b12faf658bcd0079a33fe2d8bac4bc910d8e7 Author: Deepak Cherian <[email protected]> Date: Thu Nov 25 21:41:21 2021 -0700 Update xarray/util/generate_reductions.py Co-authored-by: Mathias Hauser <[email protected]> commit 3c51b1a3ef4f6ab285886c478070334284905353 Author: Deepak Cherian <[email protected]> Date: Thu Nov 25 21:35:59 2021 -0700 Squash merge #5950 Squashed commit of the following: commit 6916fa7debfe4ca5c5ce9796fe5fe3243d6c4d2a Author: Deepak Cherian <[email protected]> Date: Mon Nov 22 11:16:43 2021 -0700 Update xarray/util/generate_reductions.py Co-authored-by: Illviljan <[email protected]> commit cd8a898d5b003ea28ec8f3feacb56d76b6dc1096 Author: dcherian <[email protected]> Date: Sat Nov 20 14:37:17 2021 -0700 add doctests commit 19d82cddf0a4ac30811803de9f7e70a881d52ea0 Author: Illviljan <[email protected]> Date: Sat Nov 20 22:00:29 2021 +0100 more reduce commit 0f94bec2953aa3e7eadd0c4efc25cd6111b7e663 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:48:27 2021 +0100 another reduce commit be33560a14ac4b9379e5d0ff4f340cfbd6d552f1 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:28:39 2021 +0100 one more reduce commit 3d854e52055de0f53f4ba16b0713ac581611ef94 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:21:26 2021 +0100 more reduce edits commit 2bbddafaacf46f65c950738a9db3cbaddb198763 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:12:31 2021 +0100 make reduce args consistent commit dfbe103c3425ba4d8aa91095ec5b7386fb785225 Merge: f03b67592 dd28a57f6 Author: Illviljan <[email protected]> Date: Sat Nov 20 19:01:59 2021 +0100 Merge branch 'generate-reductions-class' of https://github.com/dcherian/xarray into pr/5950 commit f03b67592cbff91172a50213cf0f9621062114cb Merge: 411d75d5c 7a201de64 Author: Illviljan <[email protected]> Date: Sat Nov 20 19:01:42 2021 +0100 Merge branch 'main' into pr/5950 commit dd28a57f66188db47a05fad184519295d688213d Author: dcherian <[email protected]> Date: Sat Nov 20 10:57:22 2021 -0700 updates commit 6a9a1240aa95d71ef2081f6e98152981f9db336d Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Sat Nov 20 17:02:07 2021 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 411d75d5ced18349968c060918e9bdcd4be04537 Author: Illviljan <[email protected]> Date: Sat Nov 20 18:00:08 2021 +0100 Now get normal code running as well Protocols are not needed anymore when subclassing/defining directly in the class. When adding a dummy method in DatasetResampleReductions the order of subclassing had to be changed so the correct reduce was used. commit 5dcb5bfebe04302beb732259f3e805bd31691ed8 Author: Illviljan <[email protected]> Date: Sat Nov 20 12:30:50 2021 +0100 Attempt fixing typing errors Mixing in DatasetReduce fixes: xarray/tests/test_groupby.py:460: error: Invalid self argument "Dataset" to attribute function "mean" with type "Callable[[DatasetReduce, Optional[Hashable], Optional[bool], Optional[bool], KwArg(Any)], T_Dataset]" [misc] Switching to "Dateset" as returned type fixes: xarray/tests/test_groupby.py:77: error: Need type annotation for "expected" [var-annotated] commit 7a201de643515aec9a0c88dc78253499528fa99f Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Fri Nov 19 11:37:20 2021 -0700 [pre-commit.ci] pre-commit autoupdate (#5990) commit 95394d5bcbd7d73bae34c091a080c42bcfc9f07d Author: Illviljan <[email protected]> Date: Mon Nov 15 21:40:37 2021 +0100 Use set_options for asv bottleneck tests (#5986) * Use set_options for bottleneck tests * Use set_options in rolling * Update rolling.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update rolling.py * Update rolling.py * set_options not needed. Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> commit b2d7cd8837ea9b3e7e0eb0390479a1986f62d4b4 Author: Kai Mühlbauer <[email protected]> Date: Mon Nov 15 18:33:43 2021 +0100 Fix module name retrieval in `backend.plugins.remove_duplicates()`, plugin tests (#5959) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> commit c7e9d9647f2c7df7e5b14644926dc2126ad4318f Author: dcherian <[email protected]> Date: Wed Nov 10 11:49:47 2021 -0700 Minor improvement commit dea8fd9f326a543807c26b6a62e84b28b5cb4cc3 Author: dcherian <[email protected]> Date: Mon Nov 8 16:18:07 2021 -0700 REfactor commit 9bb2c321e8df2f5978c40a1c3c8f891c77e847ff Author: dcherian <[email protected]> Date: Mon Nov 8 13:56:53 2021 -0700 Reorder docstring to match numpy commit 99bfe128066ec3ef1b297650a47e2dd0a45801a8 Author: dcherian <[email protected]> Date: Mon Nov 8 12:44:23 2021 -0700 Fixes #5898 commit 7f39cc0d8c664e3fcf354536ed3a95882064b4b6 Author: dcherian <[email protected]> Date: Mon Nov 8 12:39:00 2021 -0700 Minor docstring improvements. commit a04ed824a55b757937a4db4aa65729dccf62c1a7 Author: dcherian <[email protected]> Date: Mon Nov 8 12:35:48 2021 -0700 Small changes commit 816e7941e47b14280103d5d10da94139f394c0cd Author: dcherian <[email protected]> Date: Sun Nov 7 20:56:37 2021 -0700 Generate DataArray, Dataset reductions too. commit 569c67f28b3e7ff4c475793325a4388220932d02 Author: dcherian <[email protected]> Date: Sun Nov 7 20:54:42 2021 -0700 Add ddof for var, std commit 6b9a81a6fbe3ba460d905f0e92105d8e25af3ebb Author: dcherian <[email protected]> Date: Sun Nov 7 20:35:52 2021 -0700 Better generator for reductions. commit cfd2c071cf8df984e5bc4c673abc84e17882d323 Author: Deepak Cherian <[email protected]> Date: Thu Nov 25 21:02:44 2021 -0700 minimize conflicts commit af03ca45ed4c54b867bacf4359df565b3878c220 Author: Deepak Cherian <[email protected]> Date: Thu Nov 25 20:52:03 2021 -0700 Small improvement to resampling commit 6916fa7debfe4ca5c5ce9796fe5fe3243d6c4d2a Author: Deepak Cherian <[email protected]> Date: Mon Nov 22 11:16:43 2021 -0700 Update xarray/util/generate_reductions.py Co-authored-by: Illviljan <[email protected]> commit 4f378a3fcbcda32d62c401f6f51065381b07074d Author: dcherian <[email protected]> Date: Mon Nov 22 11:09:04 2021 -0700 Bugfix DataArray resampling. commit cd8a898d5b003ea28ec8f3feacb56d76b6dc1096 Author: dcherian <[email protected]> Date: Sat Nov 20 14:37:17 2021 -0700 add doctests commit 19d82cddf0a4ac30811803de9f7e70a881d52ea0 Author: Illviljan <[email protected]> Date: Sat Nov 20 22:00:29 2021 +0100 more reduce commit 0f94bec2953aa3e7eadd0c4efc25cd6111b7e663 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:48:27 2021 +0100 another reduce commit be33560a14ac4b9379e5d0ff4f340cfbd6d552f1 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:28:39 2021 +0100 one more reduce commit 3d854e52055de0f53f4ba16b0713ac581611ef94 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:21:26 2021 +0100 more reduce edits commit 2bbddafaacf46f65c950738a9db3cbaddb198763 Author: Illviljan <[email protected]> Date: Sat Nov 20 20:12:31 2021 +0100 make reduce args consistent commit dfbe103c3425ba4d8aa91095ec5b7386fb785225 Merge: f03b67592 dd28a57f6 Author: Illviljan <[email protected]> Date: Sat Nov 20 19:01:59 2021 +0100 Merge branch 'generate-reductions-class' of https://github.com/dcherian/xarray into pr/5950 commit f03b67592cbff91172a50213cf0f9621062114cb Merge: 411d75d5c 7a201de64 Author: Illviljan <[email protected]> Date: Sat Nov 20 19:01:42 2021 +0100 Merge branch 'main' into pr/5950 commit dd28a57f66188db47a05fad184519295d688213d Author: dcherian <[email protected]> Date: Sat Nov 20 10:57:22 2021 -0700 updates commit 6a9a1240aa95d71ef2081f6e98152981f9db336d Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Sat Nov 20 17:02:07 2021 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 411d75d5ced18349968c060918e9bdcd4be04537 Author: Illviljan <[email protected]> Date: Sat Nov 20 18:00:08 2021 +0100 Now get normal code running as well Protocols are not needed anymore when subclassing/defining directly in the class. When adding a dummy method in DatasetResampleReductions the order of subclassing had to be changed so the correct reduce was used. commit 5dcb5bfebe04302beb732259f3e805bd31691ed8 Author: Illviljan <[email protected]> Date: Sat Nov 20 12:30:50 2021 +0100 Attempt fixing typing errors Mixing in DatasetReduce fixes: xarray/tests/test_groupby.py:460: error: Invalid self argument "Dataset" to attribute function "mean" with type "Callable[[DatasetReduce, Optional[Hashable], Optional[bool], Optional[bool], KwArg(Any)], T_Dataset]" [misc] Switching to "Dateset" as returned type fixes: xarray/tests/test_groupby.py:77: error: Need type annotation for "expected" [var-annotated] commit 8f23310e68c1a08c318471cdcd9d9b5b61d236a4 Author: dcherian <[email protected]> Date: Fri Nov 19 14:50:01 2021 -0700 Revert "Force failure to make sure CI is working." This reverts commit 098467d3406c3de0cb7e2aaf38639f7ea74800ed. commit a282ad47362111da4efc637ccdaed01824a2e39c Author: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu Nov 18 14:11:30 2021 +0000 [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci commit 098467d3406c3de0cb7e2aaf38639f7ea74800ed Author: dcherian <[email protected]> Date: Thu Nov 18 07:09:17 2021 -0700 Force failure to make sure CI is working. commit bd24db4881646aba2c0466e93d6989c187aaae98 Author: dcherian <[email protected]> Date: Wed Nov 17 20:24:48 2021 -0700 Add to all-but-dask commit 033f5b590fb4df4acadff70515fd3c14b0f10935 Author: dcherian <[email protected]> Date: Wed Nov 17 20:24:10 2021 -0700 Add to print_versions commit cc8abfe28a426afe56d289307b7a9818d52c7d40 Author: dcherian <[email protected]> Date: Tue Nov 16 10:13:05 2021 -0700 [test-upstream] Rename to flox commit b269439cac3f58be18c02007b53d2cfbddd77cd8 Author: dcherian <[email protected]> Date: Mon Nov 15 17:54:27 2021 -0700 [test-upstream] Revert setting npg option in benchmarks commit ced9034d99e618c70ba397e3aee5f53a2e475fd0 Author: dcherian <[email protected]> Date: Mon Nov 15 15:29:38 2021 -0700 Update upstream-dev env commit 860f7be3cc8af1cfdc586dc6d466399ed56e4d65 Author: dcherian <[email protected]> Date: Mon Nov 15 15:22:02 2021 -0700 add extra test commit 7375dd4d6c6f8fafb771e99e0c9f27c79aad0d9b Author: dcherian <[email protected]> Date: Mon Nov 15 14:54:23 2021 -0700 fix test. commit 1f370f65f394256b16841d812557e8867ae43cbe Author: dcherian <[email protected]> Date: Mon Nov 15 14:30:03 2021 -0700 silence warning commit e038cc7a27449b693e19b2bac1003fb368466221 Author: dcherian <[email protected]> Date: Mon Nov 15 10:10:53 2021 -0700 Fix dimension order when binning a dimension coordinate commit 03b7b31da98842a216801f422151bd4ab130d9cf Author: dcherian <[email protected]> Date: Sun Nov 14 20:39:48 2021 -0700 one more bugfix commit 553735eb4dbe98d23f3a43db90f134a3cabd642a Merge: 43ade8cbd a883ed022 Author: dcherian <[email protected]> Date: Sun Nov 14 20:34:01 2021 -0700 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: Check for py version instead of try/except when importing entry_points (#5988) Add "see also" in to_dataframe docs (#5978) Alternate method using inline css to hide regular html output in an untrusted notebook (#5880) Fix mypy issue with entry_points (#5979) Remove pre-commit auto update (#5958) Do not change coordinate inplace when throwing error (#5957) Create CITATION.cff (#5956) commit 43ade8cbdbcd2bf9fc950a6fc5f5d2078b56e86f Author: dcherian <[email protected]> Date: Sun Nov 14 20:32:06 2021 -0700 "blockwise" need not be the best strategy for resample.. commit c189eea36b3bb993451c2cb6765be4cd07449b67 Author: dcherian <[email protected]> Date: Sun Nov 14 09:58:40 2021 -0700 Fix upsampling with resample (these have "empty groups") commit edbd376c792f54ade6a9447674b15a79f44c983b Author: dcherian <[email protected]> Date: Sun Nov 14 09:57:32 2021 -0700 Fix binning and weird issues with precision and pd.cut commit 415eb294af77b36f481f3c934baf617d1f55bb1e Author: dcherian <[email protected]> Date: Fri Nov 12 15:47:10 2021 -0700 Fix bug when binning by nD variable. commit e9af57c28638288532b470334547223221e1a397 Author: dcherian <[email protected]> Date: Thu Nov 11 13:36:07 2021 -0700 Try fixing mypy commit 9c2cbb8df424ff8d6e6c6faae5abc24c15a4e84b Author: dcherian <[email protected]> Date: Thu Nov 11 13:25:50 2021 -0700 Ppass through objects with only numpy or dask arrays commit 35908b590d04f7c66508d6dcea30e6ed8351ac64 Author: dcherian <[email protected]> Date: Wed Nov 10 14:33:44 2021 -0700 Revert "See if its an import error" This reverts commit be53f13b1dd832a4ba221458f64f6c277998e9da. commit be53f13b1dd832a4ba221458f64f6c277998e9da Author: dcherian <[email protected]> Date: Wed Nov 10 12:55:58 2021 -0700 See if its an import error commit 11c3d3398a12b2abcd6fd1de0af689a5d673730f Author: dcherian <[email protected]> Date: Wed Nov 10 12:37:24 2021 -0700 Fixed doctests in dask_groupby commit 77d2665458db1eec682c725e4dcdfef78454fc30 Author: dcherian <[email protected]> Date: Wed Nov 10 12:12:39 2021 -0700 Revert "Force test failure to check CI env" This reverts commit 31e1fd2419f54205616d59eb1ee176e7a61e07b2. commit c7e9d9647f2c7df7e5b14644926dc2126ad4318f Author: dcherian <[email protected]> Date: Wed Nov 10 11:49:47 2021 -0700 Minor improvement commit 47b593c481ecb93fe83dd6b9458d5683cc93119f Author: dcherian <[email protected]> Date: Wed Nov 10 09:10:39 2021 -0700 Use conda-forge numpy_groupies in CI commit 31e1fd2419f54205616d59eb1ee176e7a61e07b2 Author: dcherian <[email protected]> Date: Wed Nov 10 09:06:36 2021 -0700 Force test failure to check CI env commit 0559ee151420c31ac713829b74c3148fdfd46fa5 Author: dcherian <[email protected]> Date: Tue Nov 9 21:33:56 2021 -0700 Fix var, std doctests commit 41f0aa5aaf89b83bee6eb8f9f87f497cb4efd31e Author: dcherian <[email protected]> Date: Tue Nov 9 19:27:57 2021 -0700 fix test commit bece14e22794e5fadb9e3b3b34af920fcc2be77f Author: dcherian <[email protected]> Date: Tue Nov 9 17:41:13 2021 -0700 Fix median and add test. commit b9bc1dd0dd6e73793315457e9c9e23cf52428b4c Author: dcherian <[email protected]> Date: Tue Nov 9 17:01:27 2021 -0700 Update reductions commit 0ac5498c87492d595a6860d1bb2d1f4183b329e3 Author: dcherian <[email protected]> Date: Tue Nov 9 10:12:40 2021 -0700 Avoid stacking by default commit c9a82b3fe9d2dcc0ddee6015595be01a01d5ad00 Author: dcherian <[email protected]> Date: Tue Nov 9 10:09:29 2021 -0700 Revert "Start supporting ndim groups" This reverts commit 4ef53dbc9f84dc0a1a19f3b8cd17a3b4fd044296. commit 35af40ad26ca9e2193313d7794789ec96cd7f0ba Author: dcherian <[email protected]> Date: Mon Nov 8 21:58:02 2021 -0700 Revert "WIP refactor init" This reverts commit 6afb3bf82fbbc3a46a70d48eb74c0c9224d05bce. commit 6afb3bf82fbbc3a46a70d48eb74c0c9224d05bce Author: dcherian <[email protected]> Date: Mon Nov 8 21:57:55 2021 -0700 WIP refactor init commit 4ef53dbc9f84dc0a1a19f3b8cd17a3b4fd044296 Author: dcherian <[email protected]> Date: Mon Nov 8 21:57:21 2021 -0700 Start supporting ndim groups commit 583187a4118613f98d8a7082790724070a3df3ea Author: dcherian <[email protected]> Date: Mon Nov 8 21:08:53 2021 -0700 Fix benchmark to not groupby chunked variables. commit 3e08964dca9371ff93139f67bbc6a0170c48c28d Author: dcherian <[email protected]> Date: Mon Nov 8 16:54:52 2021 -0700 Add benchmarks commit 0c35c0c67dcd0852b08d4408c45e3790fc9b000e Author: dcherian <[email protected]> Date: Mon Nov 8 16:41:26 2021 -0700 Reimplemented commit 0661c1b667436ca5fde59cd987a1a2db94d9a75e Author: dcherian <[email protected]> Date: Mon Nov 8 16:40:20 2021 -0700 Refactored generator commit f06e6a7d5ec6575df9ac6772c6092dfa81980ae8 Author: dcherian <[email protected]> Date: Mon Nov 8 16:24:11 2021 -0700 Revert "Separate out median" This reverts commit 932b9a5d668278019bbd75ea23582ff28a463b91. commit dea8fd9f326a543807c26b6a62e84b28b5cb4cc3 Author: dcherian <[email protected]> Date: Mon Nov 8 16:18:07 2021 -0700 REfactor commit 9bb2c321e8df2f5978c40a1c3c8f891c77e847ff Author: dcherian <[email protected]> Date: Mon Nov 8 13:56:53 2021 -0700 Reorder docstring to match numpy commit 08911b9a155ca7a2f95b466fba1f97538d45f1a6 Merge: a2168df2d 20fddb7e3 Author: dcherian <[email protected]> Date: Mon Nov 8 13:58:11 2021 -0700 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: Add groupby & resample benchmarks (#5922) Fix plot.line crash for data of shape (1, N) in _title_for_slice on format_item (#5948) Disable unit test comments (#5946) Publish test results from workflow_run only (#5947) commit 99bfe128066ec3ef1b297650a47e2dd0a45801a8 Author: dcherian <[email protected]> Date: Mon Nov 8 12:44:23 2021 -0700 Fixes #5898 commit 7f39cc0d8c664e3fcf354536ed3a95882064b4b6 Author: dcherian <[email protected]> Date: Mon Nov 8 12:39:00 2021 -0700 Minor docstring improvements. commit a04ed824a55b757937a4db4aa65729dccf62c1a7 Author: dcherian <[email protected]> Date: Mon Nov 8 12:35:48 2021 -0700 Small changes commit 816e7941e47b14280103d5d10da94139f394c0cd Author: dcherian <[email protected]> Date: Sun Nov 7 20:56:37 2021 -0700 Generate DataArray, Dataset reductions too. commit 569c67f28b3e7ff4c475793325a4388220932d02 Author: dcherian <[email protected]> Date: Sun Nov 7 20:54:42 2021 -0700 Add ddof for var, std commit 6b9a81a6fbe3ba460d905f0e92105d8e25af3ebb Author: dcherian <[email protected]> Date: Sun Nov 7 20:35:52 2021 -0700 Better generator for reductions. commit a2168df2d595c4220a989fb99569196e0951d92f Author: dcherian <[email protected]> Date: Fri Nov 5 22:09:22 2021 -0600 typo again commit d238459ae2bbe2a38f855e12ca4752c2fd28051c Author: dcherian <[email protected]> Date: Fri Nov 5 21:50:30 2021 -0600 any,all commit ac85e72607594daf014e6afa50966289d5c1cc7f Author: dcherian <[email protected]> Date: Fri Nov 5 21:31:22 2021 -0600 make dask_groupby actually optional commit 932b9a5d668278019bbd75ea23582ff28a463b91 Author: dcherian <[email protected]> Date: Fri Nov 5 21:27:23 2021 -0600 Separate out median commit ad25f78be0250de7cc574c7941b2149015dde26c Author: dcherian <[email protected]> Date: Fri Nov 5 19:52:36 2021 -0600 Add to asv env commit 3608e9fa135ac93231cbf4f8bff007887a10e19d Author: dcherian <[email protected]> Date: Fri Nov 5 15:26:28 2021 -0600 get working again commit faee02c7cb95dcc97a71e2fb0b2627c0ca49f2ed Author: dcherian <[email protected]> Date: Fri Nov 5 12:37:36 2021 -0600 fix env stuff + remove env var commit 77f0e0e0765bcf335222ea0aad58b3700a76ea29 Merge: 0f2c59f7c 1ecf91a4d Author: dcherian <[email protected]> Date: Fri Nov 5 12:33:04 2021 -0600 Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies * upstream/main: (27 commits) Generator for groupby reductions (#5871) whats-new dev whats-new for 0.20.1 (#5943) Docs: fix URL for PTSA (#5935) Fix a missing @requires_zarr in tests (#5936) fix the detection of backend entrypoints (#5931) Explicitly list all reductions in api.rst (#5903) DOC: add names of missing contributors to 0.20.0 (#5932) new whats-new.rst section Update open_rasterio deprecation version number (#5916) v0.20 Release notes (#5924) [skip-ci] v0.20.0: whats-new for release (#5905) Update minimum dependencies for 0.20 (#5917) Bump actions/github-script from 4.1 to 5 (#5826) remove requirement for setuptools.pkg_resources (#5845) Update docstring for apply_ufunc, set_options (#5904) Display coords' units for slice plots (#5847) Combine by coords dataarray bugfix (#5834) Add .chunksizes property (#5900) Add typing_extensions as a required dependency (#5911) ... commit 0f2c59f7c31f8d2cd06d64ec3f4d69d87d2eeb85 Merge: 4b25db574 df7646182 Author: Anderson Banihirwe <[email protected]> Date: Tue Oct 26 17:01:49 2021 -0600 Merge branch 'main' of github.com:pydata/xarray into groupby-aggs-using-numpy-groupies commit 4b25db574d9f13059d3b0d6319ae18f9e534b6d6 Merge: e3b3a00c6 262a3f5dd Author: dcherian <[email protected]> Date: Tue Oct 5 14:49:30 2021 +0530 Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray: Update ci/requirements/environment-windows.yml commit e3b3a00c6a1e1e8cc8e20c1f2a1051efaafe9297 Author: dcherian <[email protected]> Date: Tue Oct 5 14:48:25 2021 +0530 Fix resampling commit 262a3f5dd3a22f82a719d61ac7a95758fa1d2e9b Author: Deepak Cherian <[email protected]> Date: Mon Oct 4 11:10:44 2021 +0530 Update ci/requirements/environment-windows.yml commit 9b44db9e6d3db00ab8301fe426768925e8a2ff2f Author: dcherian <[email protected]> Date: Mon Oct 4 10:45:39 2021 +0530 Fix keep_attrs test commit b97ffcb37b416e93c5481d6ce363f74e61e88dbc Author: dcherian <[email protected]> Date: Mon Oct 4 10:44:04 2021 +0530 Fix windows env commit f4748ee80fc993f9fd9a8b4dd76d242c778b64ae Author: dcherian <[email protected]> Date: Mon Oct 4 10:28:08 2021 +0530 typo commit 1d9a36053181aeedbc90c3eec5a3457327630771 Author: dcherian <[email protected]> Date: Mon Oct 4 10:21:33 2021 +0530 Add CI for now commit 462e61b79f6ecfef24275622e84378673f9e9950 Author: dcherian <[email protected]> Date: Mon Oct 4 10:16:15 2021 +0530 Don't pass numeric_only to DataArray.reduce Tests pass! commit b1e3ab25e85ad3df302209c22639e6af11b1d443 Author: dcherian <[email protected]> Date: Sun Oct 3 17:37:07 2021 +0530 Raise error when reducing along indexed dimensions with squeeze=True commit 69fd5638c45fbfe374aba6494586bd8b48aee652 Author: dcherian <[email protected]> Date: Sun Oct 3 17:30:10 2021 +0530 Avoid forwarding DummyGroup objects commit 58c1c6b7f6158af51553249389f6da1651c97b08 Author: dcherian <[email protected]> Date: Sun Oct 3 16:06:57 2021 +0530 Add _dask_groupby_kwargs commit af4cc5d44ff95e0a4aace6e867de26b1f94e63fd Author: dcherian <[email protected]> Date: Sun Oct 3 16:05:31 2021 +0530 Fix reduce methods commit cdf7612b6deac9f4b1b793d2f0014507c6e289f9 Author: dcherian <[email protected]> Date: Sun Oct 3 12:50:27 2021 +0530 Fix resample test commit 489b2ffbc10eb62e94beee4b6fb3e2e55872d4b4 Merge: 4702c9d85 54dba584d Author: Anderson Banihirwe <[email protected]> Date: Sun Sep 26 15:47:30 2021 -0600 Merge branch 'main' into groupby-aggs-using-numpy-groupies commit 4702c9d85ccfd835c1e59073a9588b8a7277f8a5 Merge: e6bcce903 9be0228af Author: dcherian <[email protected]> Date: Tue Aug 24 12:37:14 2021 -0600 Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby_npg * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray: Bump actions/github-script from 4.0.2 to 4.1 (#5730) Set coord name concat when `concat`ing along a DataArray (#5611) Add .git-blame-ignore-revs (#5708) Type annotate tests (#5728) Consolidate TypeVars in a single place (#5569) add storage_options arg to to_zarr (#5615) dataset `__repr__` updates (#5580) Xfail failing test on main (#5729) Add xarray-dataclasses to ecosystem in docs (#5725) extend show_versions (#5724) Move docstring for xr.set_options to numpy style (#5702) Refactor more groupby and resample tests (#5707) Remove suggestion to install pytest-xdist in docs (#5713) Add typing to the OPTIONS dict (#5678) Change annotations to allow str keys (#5690) Whatsnew for float-to-top (#5714) Use isort's float-to-top (#5695) Fix errors in test_latex_name_isnt_split for min environments (#5710) Improves rendering of complex LaTeX expressions as `long_name`s when plotting (#5682) Use same bool validator as other inputs (#5703) commit e6bcce9033db6da748f4b89057ef165cd6fcb6f7 Author: dcherian <[email protected]> Date: Tue Aug 24 12:35:51 2021 -0600 some fixes commit 9be0228afe1e625c707215a6a5d29c993ebdd90b Merge: 35944e434 a6b44d720 Author: Anderson Banihirwe <[email protected]> Date: Tue Aug 24 12:06:03 2021 -0600 Merge branch 'pydata:main' into groupby-aggs-using-numpy-groupies commit 35944e434d30fdc9d4094248d0898ae8a249726c Author: Anderson Banihirwe <[email protected]> Date: Fri Aug 13 15:23:09 2021 -0600 Remove `_numpy_groupies.py` module commit f0883921adf57d5c21ddb17ff9001ba8dba99514 Author: Anderson Banihirwe <[email protected]> Date: Thu Aug 12 18:49:48 2021 -0600 Fix position keyword arguments commit 3ee620018e7e6a742a4c6d107911196b22282332 Author: Anderson Banihirwe <[email protected]> Date: Thu Aug 12 18:47:32 2021 -0600 Remove comments commit 511dd448de6877f8af0d1356bf16bb20d481c209 Author: Anderson Banihirwe <[email protected]> Date: Thu Aug 12 18:43:13 2021 -0600 Add more aggregations commit ef91e6e24eb13a2974268be2c7e0479dbd219e5e Author: Anderson Banihirwe <[email protected]> Date: Thu Aug 12 18:24:03 2021 -0600 Add _numpy_groupies module commit c486df7720edf547e336112a376a7d444f2f8778 Author: Anderson Banihirwe <[email protected]> Date: Thu Aug 12 16:09:54 2021 -0600 Move `_reduce_method` classmethod to `groupby.py` module
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h5netcdf no longer warns for invalid netCDF (unless passing
save_kwargs = {"invalid_netcdf": True}. We need to adapt our tests.@kmuehlbauer
edit: I added h5netcdf to the upstream tests - I can also revert this change if you prefer.