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Options to select data to plot #15

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Options to select data to plot #15

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03fb4a8
Options to select data to plot
ondrejtichacek Jul 21, 2017
7b7d10e
Allow to change output file name
ondrejtichacek Jul 22, 2017
27cdf9e
Revert "Allow to change output file name"
ondrejtichacek Jul 22, 2017
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35 changes: 28 additions & 7 deletions examplescripts/pycorn-bin.py
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Original file line number Diff line number Diff line change
Expand Up @@ -81,6 +81,8 @@
help="Data for 2nd y-axis (Default=Cond), to disable 2nd y-axis, use --par1 None")
group1.add_argument("--par2", type = str, default=None,
help="Data for 3rd y-axis (Default=None)")
parser.add_argument("-w", "--wavelength", action='append', default=None,
help="Data to plot (Default=None)")
group1.add_argument('-f', '--format', type = str,
choices=['svg','svgz','tif','tiff','jpg','jpeg',
'png','ps','eps','raw','rgba','pdf','pgf'],
Expand Down Expand Up @@ -144,7 +146,17 @@ def smartscale(inp):
checks user input/fractions to determine scaling of x/y-axis
returns min/max for x/y
'''
UV_blocks = [i for i in inp.keys() if i.startswith('UV') and not i.endswith('_0nm')]
#UV_blocks = [i for i in inp.keys() if i.startswith('UV') and not i.endswith('_0nm')]
UV_blocks = []
for i in inp.keys():
if i.startswith('UV') and not i.endswith('_0nm'):
plot_this_data = True
if args.wavelength:
plot_this_data = any([w in i for w in args.wavelength])

if plot_this_data:
UV_blocks.append(i)

uv1_data = inp[UV_blocks[0]]['data']
uv1_x, uv1_y = xy_data(uv1_data)
try:
Expand Down Expand Up @@ -210,11 +222,17 @@ def plotterX(inp,fname):
host.set_ylim(plot_y_min, plot_y_max)
for i in inp.keys():
if i.startswith('UV') and not i.endswith('_0nm'):
x_dat, y_dat = xy_data(inp[i]['data'])
print("Plotting: " + inp[i]['data_name'])
stl = styles[i[:4]]
p0, = host.plot(x_dat, y_dat, label=inp[i]['data_name'], color=stl['color'],
ls=stl['ls'], lw=stl['lw'],alpha=stl['alpha'])

plot_this_data = True
if args.wavelength:
plot_this_data = any([w in i for w in args.wavelength])

if plot_this_data:
x_dat, y_dat = xy_data(inp[i]['data'])
print("Plotting: " + inp[i]['data_name'])
stl = styles[i[:4]]
p0, = host.plot(x_dat, y_dat, label=inp[i]['data_name'], color=stl['color'],
ls=stl['ls'], lw=stl['lw'],alpha=stl['alpha'])
if args.par1 == 'None':
args.par1 = None
if args.par1:
Expand Down Expand Up @@ -279,7 +297,10 @@ def plotterX(inp,fname):
host.yaxis.set_minor_locator(AutoMinorLocator())
if not args.no_title:
plt.title(fname, loc='left', size=9)
plot_file = fname[:-4] + "_" + inp.run_name + "_plot." + args.format
if not args.output:
plot_file = fname[:-4] + "_" + inp.run_name + "_plot." + args.format
else:
plot_file = args.output
plt.savefig(plot_file, bbox_inches='tight', dpi=args.dpi)
print("Plot saved to: " + plot_file)
plt.clf()
Expand Down