Stars
Directed evolution of proteins in sequence space with gradients
Prefect is a workflow orchestration framework for building resilient data pipelines in Python.
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
Predict the structure of immune receptor proteins
Insert NumPy style docstrings in Python functions.
Statistical Rethinking (2nd ed.) with NumPyro
Natural Gradient Boosting for Probabilistic Prediction
Multivariate imputation and matrix completion algorithms implemented in Python
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
Book about interpretable machine learning
Prelude is an enhanced Emacs 25.1+ distribution that should make your experience with Emacs both more pleasant and more powerful.
Naming and shaming companies who kowtow to Chinese censorship requests
HungaBunga: Brute-Force all sklearn models with all parameters using .fit .predict!
JupyterLab Top Bar extensions
Mapping out the coarse-grained connectivity structures of complex manifolds.
Generic script for the analysis of scRNA-seq data pre-processed using https://github.com/Hoohm/dropSeqPipe.
📚 Parameterize, execute, and analyze notebooks
Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts
Voilà turns Jupyter notebooks into standalone web applications
A general-purpose probabilistic programming system with programmable inference
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
ripgrep recursively searches directories for a regex pattern while respecting your gitignore
A framework for blind denoising with self-supervision.