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1. Parsebio-snRNA-seq-pipeline Parsebio-snRNA-seq-pipeline Public

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2. Opentrons2-robot-protocols Opentrons2-robot-protocols Public

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3. Lexogen-RNA-seq-pipeline Lexogen-RNA-seq-pipeline Public

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4. Clarifying-the-Transcriptional-Profiles-of-Malignant-Clones-through-Multiscale-and-Multiomic...- Clarifying-the-Transcriptional-Profiles-of-Malignant-Clones-through-Multiscale-and-Multiomic...- Public

   This is the relevant code to accompany the manuscript "Clarifying the Transcriptional Profiles of Malignant Clones through Multiscale and Multiomic Analysis of Individual Tumors" by Schupp, et al.

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5. Clonal-tree-derivation-exome-amp-rnaseq-pipeline Clonal-tree-derivation-exome-amp-rnaseq-pipeline Public

   Pipeline to create clonal tree of malignant tissue with absolute abundances from exome, amplicon, and RNA-seq bulk data.

6. Parsebio-scRNA-seq-workflow Parsebio-scRNA-seq-workflow Public

   files and data pertaining to the Parsebio scRNA-seq kit