This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

ISA tools API

A python library to detect and output cycles in JSON schemas

Development of Arabidopsis dataset for www.ebi.ac.uk/metabolights

Development of Arabidopsis dataset for www.ebi.ac.uk/metabolights

HMS LINCS ISA-Tab

The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Magui…

Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.

Documentation

Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.

Documentation

A simple loader (using CSVReader) and some manipulation methods to allow one to get subsets of columns or rows.

ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

Converter which can pull from ArrayExpress (by an accession number) or read local files and convert them to ISAtab. Lead by Philippe Rocca-Serra & Eamonn Maguire, University of Oxford

The web application, model, database persistence, services package and web services for the BII. Led by Tim Booth (NERC), Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford) and Marco Brandizi (E…

The ISAvalidator, ISA converter and BII data manager tools

ISAcreator is a Java desktop application which allows for creation and editing of ISATab files. Led by Eamonn Maguire and Philippe Rocca-Serra (Uni. of Oxford).

ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran…

The ISAvalidator, ISA converter and BII data manager tools

The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Magui…

The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).