An Electron based linux app for controlling your sonos system.

Train transformer language models with reinforcement learning.

A Nextflow workflow for HLA typing using HLA-HD

Shrink a large genome down to predefined functional regions

Expose plotly dash apps as django tags

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

tools for working with genome variation graphs

Official home of genome aligner based upon notion of Cactus graphs

Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.

A guide for researching ways of funding open source projects.

Sequence lineage information extracted from RKI sequence data repo

Utility to alias and dealias pango lineages

A micromamba-based VS Code development container image.

Multi-arch Docker image packaging for tox. Includes common build dependencies and currently active CPython versions.

Python wrapper around Nextflow.

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

Mulled - Automatized Containerized Software Repository

Conda recipes for the bioconda channel.

GPT RStudio addins that enable GPT assisted coding, writing & analysis

GitHub Actions for the R community

A list of various lists consisting of academics on Mastodon

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

phasing and Allele Specific Expression from RNA-seq

GATK RNA-Seq Variant Calling in Nextflow