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  • Los Alamos National Laboratory

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@LANL-Bioinformatics

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Recombinant And Mixed-Infection Finder for SARS-CoV-2

HTML 3 2 Updated Jan 25, 2023

A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

Perl 344 83 Updated Apr 12, 2023

CLI tool for flexible and fast adaptive sampling on ONT sequencers

Python 167 31 Updated Aug 27, 2024

Software, architecture, and data index design for the 2018/2019 Virus Discovery Project

Jupyter Notebook 31 20 Updated Mar 8, 2020

Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (gene…

Perl 2 1 Updated Oct 25, 2021