Lists (7)
Stars
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
Gene tree - species tree reconciliation from gene tree distributions
Making Protein folding accessible to all!
snakemake pipeline for creating trees from sequence sets
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
A parallel implementation of gzip for modern multi-processor, multi-core machines.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Python script is designed to fetch and process genomic data from the Joint Genome Institute (JGI) API, allowing users to request file downloads programmatically based on given taxon IDs.
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
The stand-alone version of Metagenomic Thermometer (https://metathermo.jp/).
Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
Prediction of aerobicity in extant and ancient genomes
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
scripts for estimating bacteria replication rates based on population genome copy number variation
Make sankey, alluvial and sankey bump plots in ggplot
SemiBin: metagenomics binning with self-supervised deep learning
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data