Stars
Code for experiments in the UCSD Neurobiology Lab (BIPN 145)
Tutorial notebook and slides for the workshop "Jupyter Notebooks as a Teaching Tool in Neuroscience Courses"
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
Files required to follow along the introduction session to machine learning with sklearn and nilearn
Generate custom Docker and Singularity images, and minimize existing containers
The Starter-kit has moved to the new BIDS website.
Talks and materials for workshops based on the DataLad handbook
TrainTrack materials on BIDS and BIDS Apps for OHBM Brainhack 2020
BrainHack 2020 good coding practices in MATLAB and Octave
Because we all need pointers when it comes to make our code better.
Carpentries lesson materials for the ROAR (Robust and Open Analysis in R) workshop
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Create a docker image to get an .stl from an MRI scan, for 3d printing
How to 3D print your brain from a T1 MRI image.