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ETH Zürich @cbg-ethz
- Basel, Switzerland
- https://pedrofale.github.io/
- @pfalef
Starred repositories
Spatial mapping of cell types by integration of transcriptomics data
Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.
Computational method and analyses to study the clonality of circulating tumor cell clusters
Reference implementation of variational sequential Monte Carlo proposed by Naesseth et al. "Variational Sequential Monte Carlo" (2018)
chaoran-chen / ethz-thesis
Forked from tuxu/ethz-thesisLaTeX template for a PhD thesis at ETH Zurich
Estimation of clone-specific dynamical transition rate
Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
Spatiotemporal modeling of spatial transcriptomics
Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…
A declarative interactive genomics visualization library for Python.
colobas / gos
Forked from gosling-lang/gosA declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.
A novel machine learning pipeline to analyse spatial transcriptomics data
Football pitch plotting library for matplotlib
Tensorflow implementation of Hyperspherical Variational Auto-Encoders
Tree inference from mitochondrial mutations