MLX: An array framework for Apple silicon

A full spaCy pipeline and models for scientific/biomedical documents.

TypeDB: the polymorphic database powered by types

This is the development home of the workflow management system Snakemake. For general information, see

An IPython magic extension for printing date and time stamps, version numbers, and hardware information

Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science

Examples of pybind11 based projects (using cmake)

Examples for the usage of "pybind11"

A library of free open source icons for science illustrations in biology and chemistry

🔥 A tool for visualizing and tracking your machine learning experiments. This repo contains the CLI and Python API.

PyTorch Geometric Temporal: Spatiotemporal Signal Processing with Neural Machine Learning Models (CIKM 2021)

Fuzzy String Matching in Python

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

Tutorials for Machine Learning on Graphs

KErnel OPerationS, on CPUs and GPUs, with autodiff and without memory overflows

Laughs at your expense

Graph Neural Network Library for PyTorch

Generate procedural landmass in Unity

Simulated flocking of birds

Rendering Realistic Bokeh Images with PyNET

unclutter your .profile

Density-preserving data visualization tools den-SNE and densMAP

🔺 Ternary plotting library for python with matplotlib

The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRNAseq data. However, existing techniques are based on Euclide…

A basic user tool to execute simple docker containers in batch or interactive systems without root privileges.

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

Render probabilistic graphical models using matplotlib

Dimensionality reduction in very large datasets using Siamese Networks