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@paulsengroup

paulsengroup

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  1. hictk hictk Public

    Blazing fast toolkit to work with .hic and .cool files

    C++ 14 1

  2. hictkpy hictkpy Public

    Python bindings for hictk: read and write .cool and .hic files directly from Python

    C++ 6

  3. hictkR hictkR Public

    R bindings for hictk: read .cool and .hic files directly from R

    C++ 1

  4. modle modle Public

    High-performance stochastic modeling of DNA loop extrusion interactions

    C++ 16 1

Repositories

Showing 10 of 10 repositories
  • hictkpy Public

    Python bindings for hictk: read and write .cool and .hic files directly from Python

    paulsengroup/hictkpy’s past year of commit activity
    C++ 6 MIT 0 0 2 Updated Jun 25, 2024
  • 2022-mcf10a-cancer-progression Public
    paulsengroup/2022-mcf10a-cancer-progression’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 8 Updated Jun 25, 2024
  • NCHG Public
    paulsengroup/NCHG’s past year of commit activity
    C++ 0 GPL-3.0 0 0 1 Updated Jun 19, 2024
  • hictk Public

    Blazing fast toolkit to work with .hic and .cool files

    paulsengroup/hictk’s past year of commit activity
    C++ 14 MIT 1 4 3 Updated Jun 18, 2024
  • ci-docker-images Public

    Repository to build and host CI Docker images for various projects

    paulsengroup/ci-docker-images’s past year of commit activity
    Dockerfile 1 MIT 0 0 1 Updated Jun 17, 2024
  • modle Public

    High-performance stochastic modeling of DNA loop extrusion interactions

    paulsengroup/modle’s past year of commit activity
    C++ 16 1 4 8 Updated May 23, 2024
  • hictkR Public

    R bindings for hictk: read .cool and .hic files directly from R

    paulsengroup/hictkR’s past year of commit activity
    C++ 1 MIT 0 1 1 Updated May 20, 2024
  • 2023-hictk-paper Public
    paulsengroup/2023-hictk-paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 5 Updated Apr 23, 2024
  • 2022-confined-polymer-paper-data-analysis Public

    Data analysis code for: "Association of flexible filaments under different confinement geometries"

    paulsengroup/2022-confined-polymer-paper-data-analysis’s past year of commit activity
    Nextflow 0 MIT 0 0 2 Updated Jan 31, 2023
  • 2021-modle-paper-001-data-analysis Public archive

    Data analysis code for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions": https://doi.org/10.1186/s13059-022-02815-7

    paulsengroup/2021-modle-paper-001-data-analysis’s past year of commit activity
    Python 1 1 0 0 Updated Nov 30, 2022

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