Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Download of E-MTAB expression data fails #2

Closed
patflick opened this issue Feb 18, 2016 · 0 comments
Closed

Download of E-MTAB expression data fails #2

patflick opened this issue Feb 18, 2016 · 0 comments

Comments

@patflick
Copy link
Owner

The download of E-MTAB-513 expression data fails silently and downloads a html error page instead.
Then when trying to import the file, the init_data.py script will fail with:

Traceback (most recent call last):
  File "init_data.py", line 118, in <module>
    emtab_expr.init_data()
  File "/Users/gatto/Documents/Academia/Projects/PPi-HPA/scripts/tsppi/src/pappi/expr/expr.py", line 32, in init_data
    self.import_raw_file()
  File "/Users/gatto/Documents/Academia/Projects/PPi-HPA/scripts/tsppi/src/pappi/expr/emtab.py", line 29, in import_raw_file
    sql_conn=self.sql_conn, skip_rows=3)
  File "/Users/gatto/Documents/Academia/Projects/PPi-HPA/scripts/tsppi/src/pappi/sql.py", line 137, in import_csv
    row = csv_reader.__next__()
StopIteration
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant