Skip to content

Commit

Permalink
update readmes
Browse files Browse the repository at this point in the history
  • Loading branch information
patflick committed Sep 24, 2014
1 parent f323db7 commit 8dd5928
Show file tree
Hide file tree
Showing 2 changed files with 24 additions and 6 deletions.
23 changes: 17 additions & 6 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -44,16 +44,27 @@ The code is organized into different parts:

### Dependencies

- python3 (sqlite3)
- NetworKit
- C++11 compiler
- fastSemSim
-
- `python3` (sqlite3)
- `g++` (version >= 4.7)
- TODO: fastSemSim
- `scons` (for NetworKit compilation)
- `cython`
- `sqlite3-dev`
- `mercurial`


### Compiling

TODO (building python modules
To compile the NetworKit interacting cython module (including the extended
algorithms for Subgraph datastructures), first install the before mentioned
dependencies.

Then you can simply run the `build.sh` script in the main directory of the
repository:

```sh
./build.sh
```


### Data
Expand Down
7 changes: 7 additions & 0 deletions data/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,13 @@ The following data sources need to be manually obtained, since they are not

- Dana Farber CCSB HI-2012 PPI network (see below)

If you don't want to sign up to get this data, you can instead download one of
the older Human Interactomes from their website and name it `HI_2012_PRE.tsv` in
the `ppi/` folder. Note that the results from the analysis pipeline will be
different for this network, since it uses different data. All other results
should remain identical. The pipeline will not execute if this file is not
available.


Protein-Protein Interaction Networks
------------------------------------
Expand Down

0 comments on commit 8dd5928

Please sign in to comment.