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Pull requests: pachterlab/kallisto

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Pull requests list

lr-kallisto
#448 by Yenaled was merged Jul 20, 2024 Loading…
Update batch processing length normalization to match non-batch processing length normalization
#441 by bound-to-love was merged May 16, 2024 Loading…
11
lr-kallisto, adding long read pseudoalignment and quantification options
#436 by bound-to-love was merged May 4, 2024 Loading…
Devel
#409 by Yenaled was merged Nov 1, 2023 Loading…
Add STORM- and VASA-seq support
#407 by biobenkj was merged Oct 26, 2023 Loading…
D-list updates
#404 by Yenaled was merged Oct 21, 2023 Loading…
All D-list transcripts have the same ID
#395 by kreldjarn was merged Aug 27, 2023 Loading…
Added option to change d-list overhang
#393 by kreldjarn was merged Aug 14, 2023 Loading…
EM priors
#389 by kreldjarn was merged Sep 20, 2023 Loading…
Update KmerIndex.cpp so --aa option can handle lower case sequences
#387 by lauraluebbert was closed Aug 14, 2023 Loading…
Devel
#384 by pmelsted was merged Jun 27, 2023 Loading…
Merging
#381 by Yenaled was merged May 31, 2023 Loading…
add STORM-seq chemistry
#359 by biobenkj was closed Oct 4, 2023 Loading…
Add missing <limits> header
#334 by flying-sheep was closed Mar 31, 2022 Loading…
1
Functional testing implemented
#331 by Yenaled was merged Nov 7, 2021 Loading…
Fix typo
#328 by Munfred was merged Mar 31, 2022 Loading…
Add visium; update version num
#327 by Yenaled was merged Oct 14, 2021 Loading…
split-seq; version update; deprecate pseudo
#326 by Yenaled was merged Oct 7, 2021 Loading…
Added SPLiT-seq technology
#325 by agalvezm was closed Mar 31, 2022 Loading…
1
Added #include <limits>
#320 by Yenaled was merged Aug 12, 2021 Loading…
Devel
#317 by Yenaled was merged Jan 17, 2022 Loading…
Update error message reporting for kallisto bus
#316 by Yenaled was merged Jul 25, 2021 Loading…
quant-tcc: Output list of gene names into genes.txt instead of output…
#315 by Yenaled was merged Jul 25, 2021 Loading…
Write out index.saved for bulk; kallisto bus with no technology strin…
#314 by Yenaled was merged Jul 22, 2021 Loading…
Updates to kallisto bus with no technology option specified
#313 by Yenaled was merged Jul 22, 2021 Loading…
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