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Pull requests: owkin/PyDESeq2

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Pull requests list

[pre-commit.ci] pre-commit autoupdate
#301 by pre-commit-ci bot was merged Jul 9, 2024 Loading…
REL v0.4.10
#300 by BorisMuzellec was merged Jul 2, 2024 Loading…
MAINT cast counts to int when initialising a DeseqDataSet from anndata
#299 by BorisMuzellec was merged Jul 2, 2024 Loading…
[pre-commit.ci] pre-commit autoupdate
#298 by pre-commit-ci bot was merged Jul 2, 2024 Loading…
DOC fix text format in DeseqStats docstring
#297 by BorisMuzellec was merged Jul 1, 2024 Loading…
BUG: creating columns on all levels even for continuous
#296 by umarteauowkin was closed Jun 26, 2024 • Draft
[pre-commit.ci] pre-commit autoupdate
#295 by pre-commit-ci bot was merged Jul 1, 2024 Loading…
DOC: specify what happens if n_cpus and inference are set
#294 by umarteauowkin was merged Jun 13, 2024 Loading…
1
Fix Inference n_cpus overwritten issue
#293 by yihming was merged Jun 13, 2024 Loading…
2
ENH Remove count DataFrame from calculate_cooks
#292 by asistradition was merged Jul 2, 2024 Loading…
5
[pre-commit.ci] pre-commit autoupdate
#290 by pre-commit-ci bot was merged Jun 11, 2024 Loading…
CHORE: update code owners
#289 by ghost was merged Jun 10, 2024 Loading…
summary function uses quiet to print
#286 by yihming was merged Jun 10, 2024 Loading…
1
[pre-commit.ci] pre-commit autoupdate
#285 by pre-commit-ci bot was merged Jun 10, 2024 Loading…
Poscount implementation & diag(XXT) optimization
#284 by asistradition was merged Jun 11, 2024 Loading…
4
[pre-commit.ci] pre-commit autoupdate
#283 by pre-commit-ci bot was merged May 28, 2024 Loading…
Replace np.NaN with np.nan -> numpy 2.0 compat
#282 by Zethson was merged May 27, 2024 Loading…
3
BUG initialize beta_init when the design matrix is not full rank
#281 by BorisMuzellec was merged May 21, 2024 Loading…
1
1
[pre-commit.ci] pre-commit autoupdate
#279 by pre-commit-ci bot was merged May 14, 2024 Loading…
[pre-commit.ci] pre-commit autoupdate
#278 by pre-commit-ci bot was merged May 7, 2024 Loading…
[pre-commit.ci] pre-commit autoupdate
#277 by pre-commit-ci bot was merged Apr 30, 2024 Loading…
REL v0.4.9
#276 by BorisMuzellec was merged Apr 25, 2024 Loading…
BUG update genewise dispersions and fitted dispersions of refitted genes
#274 by BorisMuzellec was merged Apr 25, 2024 Loading…
1
[pre-commit.ci] pre-commit autoupdate
#273 by pre-commit-ci bot was merged Apr 23, 2024 Loading…
[pre-commit.ci] pre-commit autoupdate
#269 by pre-commit-ci bot was merged Apr 16, 2024 Loading…
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